- Transcript HORVU7Hr1G096640.16
- Transcript IDHORVU7Hr1G096640.16
- Gene IDHORVU7Hr1G096640
Barley RTD
Exon Structure of HORVU7Hr1G096640.16
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 588697804 | 588697761 | + |
| chr7H | 2 | 588699991 | 588698062 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g28460.1 | +1 | 1e-177 | 524 | 321/694 (46%) | protein|NBS-LRR disease resistance protein, putative, expressed |
| TAIR PP10 | AT3G07040 @ ARAPORT AT3G07040.1 @ TAIR |
+1 | 2e-41 | 162 | 171/616 (28%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926 |
| BRACH PP3 | Bradi3g34697.5.p | +1 | 0.0 | 978 | 499/656 (76%) | pacid=32815100 transcript=Bradi3g34697.5 locus=Bradi3g34697 ID=Bradi3g34697.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1974 bp)
>HORVU7Hr1G096640.16 1974 150831_barley_pseudomolecules ACTGAACTGCACACTAAGTTAGCTCCTATTTTTCAACAAGTTTTGTACTTCATCATAGTA GATGATGTATGGGACGTTCAAACATGGGATATTCTCAAGGGTGCCTTTCCAAAAGGCAAT TTTGGTAGCAGAATAATCACAACAACGCGGATACATGAGGTAGCCAAATCATGCTGTGCT TCATGTGGGGGGCGAGTTTATACAGTAAGCCCTCTCAGTGCCATCGATTCGGAAAGGTTG TTTTTTAAGTTGGTGTTCAATTCTGGTGAGCAATGCCCATCCCACCTGAAAAGAGTTTCT GACAAGATCTTGCAAAAATGTGGTGGTCTGCCGCTGGCAATTATTGCTATATCCGGTTTG CTGATTGCCAATACGCATGAAGATCAGTGGGAGCAAGTGTACAGTTCTATCAGGCATGGA CTTGGAAGCAACCCTGCCGTCGAAAGAACCATGAGGATTTTGTTGCTTGGCTACTTTGAT CTTACTCCTTGCCTGAAATCTTGCCTGCTTTATCTCAGTGTATTCCCGGAAGGCTGTGCT GTCAAGAAGGAACGTCTGGTAATGAGATGGATTGCCGAGGGGTTCATTCCTGAAGAGCAT GGGCACACCCTTTATGAATCAGGAGAGAGGTGTTTTAACGAGCTCATCGACCGGAACCTG ATCCAACCAGGGGAGATAAATAAGTTTGGGGAGGTGGAAAGCTGTCGAGTCCATGGTATA ATTTTTGATTTCCTTGTATCCATGTCAAACCAAGACAATTTTGTTACTTTATTGGGTGTA CCTGGTGTAAACCCTGAGCCAGGAAACAAAGTCCGTCGATTGTCTCTACAGGGTGACAGT GAGATTCCAGCAGATCTTATTTTGTGTAAAGCCCGGTCACTTTCTGTTTTTGGTCATTGT GTTAAAATGCCATCGCTCTGGAAGTCCAGACACTTGCATATTTTAGATTTGGTTTGTTCT GGGAAAGTAGAAGATCAACATCTTGCAGAAATAGGTGGTCTGTTCCATCTTAAGTACCTG AGGCTCAAGTCAAAAGTTGGAAAGCTTCCCCAGCAAATAGCAGAGTTACAGTCCTTGGAG TCACTCGAGATATGTGAAAGCAACGCGACAACTGAGATTCCACCAGCCATCAATCAACTT ACACGGTTGGTACGTCTAGTTGTTCACGACGAAACTATATTACCGGATGAAATCGGTGGC CTCAAAGCATTGCAAGTGTTGAGAGGTATCAATGTCAACACCCAGTCAACCAACTTTGTT CGGCAACTTTGCCTACTATCAAACCTGAGGGAACTAAGCACAAGTTTTATCAACTATTAT GCGGGTGATAACTGGAAGGAGAATCAGGAAGAGATGGTCAATTCGATTTGTAGGCTAGGC AAAGCAAATCTTCATGTTCTACATATTACTATCAATGAGGGAGCAGATGAGATCTTTGAG GAATCATGGTGCCCTGCTCCACTTAGTCTCCGAGAACTCGTTGTCGAGGTGGGCGTAGTC TCGACTGTTCCGAGATGGATTGGCTCACTTGTCAACCTCCAGAGATTAGCCGTGCTTATG TGGGAAGTTGGGGAGGAGGATGTGGTGATCCTGGGAAGCCTACCTGATCTGCGCCATCTT AGCCTCACTGCACTGGCAGCTGGGTCAAAAGAAGGGCGGCTTAGAGTCGCCCAAAGCCAT GGATTCCCTTCCTTGATCAGTTTCCAGATCGGCGGAGAAGAGTGTGCACTGGGGTTAGTT TTTGAAGCTGGTTCCATGCCGAAGCTACAAAATCTTGAGCTTGAGTTCGACGCAGAGGAA ACTAGTTCTGTGACTGATGGTGAGTTTGATTTTGGCATCAAGCACCTCCCCTGCCTGACA AGCACATCAGTTCGCTCTACTTGCGACGAATCCATTCGTCCAACATTGGAGGCCGCCATG GAGAGATGCATCAAGGACCATCCCAACCATCCCACGTTGATATGGACGAAATGA