Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU7Hr1G096640	93.9	+	+	4280	-277	Containing

Transcripts from Gene BART1_0-u55232

Transcript	Length(bp)	Description
BART1_0-u55232.001	3647	3647 bp MSTRG.55232.1 MSTRG.55232
BART1_0-u55232.002	3663	3663 bp MSTRG.55232.2 MSTRG.55232
BART1_0-u55232.003	3618	3618 bp MSTRG.55232.3 MSTRG.55232
BART1_0-u55232.004	3552	3552 bp MSTRG.55232.4 MSTRG.55232
BART1_0-u55232.005	3613	3613 bp MSTRG.55232.5 MSTRG.55232

Exon Structure of BART1_0-u55232

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os08g28540.1	+2	0.0	613	379/923 (41%)	protein|resistance protein LR10, putative, expressed
TAIR PP10	AT3G07040 @ ARAPORT AT3G07040.1 @ TAIR	+2	4e-56	211	234/889 (26%)	Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926
BRACH PP3	Bradi3g34697.5.p	+2	0.0	1219	641/907 (71%)	pacid=32815100 transcript=Bradi3g34697.5 locus=Bradi3g34697 ID=Bradi3g34697.5.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding
GO:0016021	integral component of membrane
GO:0043531	ADP binding

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons