- Transcript HORVU7Hr1G096640.2
- Transcript IDHORVU7Hr1G096640.2
- Gene IDHORVU7Hr1G096640
Barley RTD
Exon Structure of HORVU7Hr1G096640.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 588696483 | 588696199 | + |
| chr7H | 2 | 588697443 | 588696583 | + |
| chr7H | 3 | 588699997 | 588698062 | + |
| chr7H | 4 | 588700462 | 588700120 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g28540.1 | +2 | 0.0 | 613 | 379/923 (41%) | protein|resistance protein LR10, putative, expressed |
| TAIR PP10 | AT3G07040 @ ARAPORT AT3G07040.1 @ TAIR |
+2 | 2e-56 | 212 | 234/889 (26%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926 |
| BRACH PP3 | Bradi3g34697.5.p | +2 | 0.0 | 1218 | 641/907 (71%) | pacid=32815100 transcript=Bradi3g34697.5 locus=Bradi3g34697 ID=Bradi3g34697.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3425 bp)
>HORVU7Hr1G096640.2 3425 150831_barley_pseudomolecules ATTATATTAAATGTTGTGTTAAATGTGTCATGCATAATAATAAATAAACTTTTATATAAT ACTGACATATGATTATGTGTCATGCAATACCTCCTGTGATCCTCTCCCCATCCCTACCCT ACCACCGGAGCAGCCAAGAAAGAAATCTGGCCGCAATCGTTTGGGGTGAACACGGCGGAG CTCCTCGTCTCCAAATCCCTACACCCCTTGAGTCGTTCATCTGCGGAATCATCCTTGCTT CTCTTGAGGTTCATGGCAAGGATCAAGGTAGTACACAGAGACAGATCCGATTAGCATCTC GTGCAAATTCATTCCAGTCCTGTTAGTCCTTGACGCGAACCAAGCTGACCGAAGCCCCGG CTTCCGAGCCTCGCCCTCGTTACGGCTGGCTGAGATGGAGCCCGTGAGCGCGGCCACGGG GGCCATGGGGTCCGTCCTGGGGAAGCTGGGCGCCCTGTTTGCCGACGGCCACGAGGTTTC CAACGGCGACGTCGAGTCCCTCAAGGCGGAGCTCCAGGCGGTGCACGCCTTCCTCAAGGC AACATCCCAGGCCGAGGACCCCGGCGAGCGAGGCAGGCGCTGGATGAAGGAGGCGCGGGA GTTGTCGTACGACGTGGAGGACGCGCTAGACAAGTTCATGCTCCATTCCCGCGACGGATC TGGTGCTGCTGATAACGACTCGGACGGTTTCTCTGAAAAGATGAGCGCCTGGTTGTCGGA GGCGGCGGCTCGCCGTCGGACAGGCCAGGAGATCAGCGATGCCATCTCCAGGGCCGGCGG CGCCGAGGCGGAGGATCCCCGCCGGGACTGCTCTCTCTACAGAGAGACGGGTGAACCCGT GGGCGTCGACGGGCCGGCTGCTCAACTCATCAGAATGGTGGACGGAGGAGGGAAGCAATT GGATCTGGAGGTGGTTTCCATGGTCGGGTGTGGGGGGCTGGGCAAGACGACTCTTGCTCG TCGCGTCTACGACACAATGGGTCAGCAGTTCGAGTGTCGGGCTTTCGTCTCCGTCTCCCG GAGACCTCATGTGGTTGCAATTTTGAGCGACATTCGGAGCCAACTGGGGTATGAGTATGC CCAAAGCTTAACTGAGGATGCAAAATCGCTCCTTGACAGCATCTCCAATTTCCTTCAGGA TAAAAGGTACTTCATCATAGTAGATGATGTATGGGACGTTCAAACATGGGATATTCTCAA GGGTGCCTTTCCAAAAGGCAATTTTGGTAGCAGAATAATCACAACAACGCGGATACATGA GGTAGCCAAATCATGCTGTGCTTCATGTGGGGGGCGAGTTTATACAGTAAGCCCTCTCAG TGCCATCGATTCGGAAAGGTTGTTTTTTAAGTTGGTGTTCAATTCTGGTGAGCAATGCCC ATCCCACCTGAAAAGAGTTTCTGACAAGATCTTGCAAAAATGTGGTGGTCTGCCGCTGGC AATTATTGCTATATCCGGTTTGCTGATTGCCAATACGCATGAAGATCAGTGGGAGCAAGT GTACAGTTCTATCAGGCATGGACTTGGAAGCAACCCTGCCGTCGAAAGAACCATGAGGAT TTTGTTGCTTGGCTACTTTGATCTTACTCCTTGCCTGAAATCTTGCCTGCTTTATCTCAG TGTATTCCCGGAAGGCTGTGCTGTCAAGAAGGAACGTCTGGTAATGAGATGGATTGCCGA GGGGTTCATTCCTGAAGAGCATGGGCACACCCTTTATGAATCAGGAGAGAGGTGTTTTAA CGAGCTCATCGACCGGAACCTGATCCAACCAGGGGAGATAAATAAGTTTGGGGAGGTGGA AAGCTGTCGAGTCCATGGTATAATTTTTGATTTCCTTGTATCCATGTCAAACCAAGACAA TTTTGTTACTTTATTGGGTGTACCTGGTGTAAACCCTGAGCCAGGAAACAAAGTCCGTCG ATTGTCTCTACAGGGTGACAGTGAGATTCCAGCAGATCTTATTTTGTGTAAAGCCCGGTC ACTTTCTGTTTTTGGTCATTGTGTTAAAATGCCATCGCTCTGGAAGTCCAGACACTTGCA TATTTTAGATTTGGTTTGTTCTGGGAAAGTAGAAGATCAACATCTTGCAGAAATAGGTGG TCTGTTCCATCTTAAGTACCTGAGGCTCAAGTCAAAAGTTGGAAAGCTTCCCCAGCAAAT AGCAGAGTTACAGTCCTTGGAGTCACTCGAGATATGTGAAAGCAACGCGACAACTGAGAT TCCACCAGCCATCAATCAACTTACACGGTTGGTACGTCTAGTTGTTCACGACGAAACTAT ATTACCGGATGAAATCGGTGGCCTCAAAGCATTGCAAGTGTTGAGAGGTATCAATGTCAA CACCCAGTCAACCAACTTTGTTCGGCAACTTTGCCTACTATCAAACCTGAGGGAACTAAG CACAAGTTTTATCAACTATTATGCGGGTGATAACTGGAAGGAGAATCAGGAAGAGATGGT CAATTCGATTTGTAGGCTAGGCAAAGCAAATCTTCATGTTCTACATATTACTATCAATGA GGGAGCAGATGAGATCTTTGAGGAATCATGGTGCCCTGCTCCACTTAGTCTCCGAGAACT CGTTGTCGAGGTGGGCGTAGTCTCGACTGTTCCGAGATGGATTGGCTCACTTGTCAACCT CCAGAGATTAGCCGTGCTTATGTGGGAAGTTGGGGAGGAGGATGTGGTGATCCTGGGAAG CCTACCTGATCTGCGCCATCTTAGCCTCACTGCACTGGCAGCTGGGTCAAAAGAAGGGCG GCTTAGAGTCGCCCAAAGCCATGGATTCCCTTCCTTGATCAGTTTCCAGATCGGCGGAGA AGAGTGTGCACTGGGGTTAGTTTTTGAAGCTGGTTCCATGCCGAAGCTACAAAATCTTGA GCTTGAGTTCGACGCAGAGGAAACTAGTTCTGTGACTGATGGTGAGTTTGATTTTGGCAT CAAGCACCTCCCCTGCCTGACAAGCACATCAGTTCGCTCTACTTGCGACGAATCCATTCG TCCAACATTGGAGGCCGCCATGGAGAGATGCATCAAGGACCATCCCAACCATCCCACGTT GATATGGACGAAATGAACATTTGGAAAAAATCAAGCAGGCTGATAGAAGCTGCAGTTAGA ATGAGCAAGAAGATGGGTGAACATGATTTGTAGGGTGACAGTGGAAAGCCAAGATGGGAG CAATATTGGTCCGAATTTTTTTTTTGATTGAATATCCGACTGAAGTTCTTGTTACATTCA GTCAGTGGTATTCTATGTATCCAAAAGTCAAATGAGGGCGTGTTCCTATTTTTCCTGAAA TGTTTCAGACACGAGCAATCAGCGTGGTGGAACGCATGACTGATGGCTATCATTTTCTTT TTGTTCCTTCGTTGTTTTTTCGTTGAAGTGAGCAAGTGACATTTTTTAATTTTCTCAAGT ACTCC