- Transcript HORVU7Hr1G096640.13
- Transcript IDHORVU7Hr1G096640.13
- Gene IDHORVU7Hr1G096640
Barley RTD
Exon Structure of HORVU7Hr1G096640.13
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 588696483 | 588696337 | + |
| chr7H | 2 | 588697443 | 588696583 | + |
| chr7H | 3 | 588699565 | 588698062 | + |
| chr7H | 4 | 588699997 | 588699962 | + |
| chr7H | 5 | 588700269 | 588700120 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g28540.1 | +2 | 2e-179 | 543 | 333/781 (43%) | protein|resistance protein LR10, putative, expressed |
| TAIR PP10 | AT3G50950 @ ARAPORT AT3G50950.1 @ TAIR |
+2 | 1e-52 | 198 | 232/786 (30%) | Symbols: ZAR1 | HOPZ-ACTIVATED RESISTANCE 1 | chr3:18936127-18938685 FORWARD LENGTH=852 |
| BRACH PP3 | Bradi3g34697.5.p | +2 | 0.0 | 996 | 534/772 (69%) | pacid=32815100 transcript=Bradi3g34697.5 locus=Bradi3g34697 ID=Bradi3g34697.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2698 bp)
>HORVU7Hr1G096640.13 2698 150831_barley_pseudomolecules AAAGAAATCTGGCCGCAATCGTTTGGGGTGAACACGGCGGAGCTCCTCGTCTCCAAATCC CTACACCCCTTGAGTCGTTCATCTGCGGAATCATCCTTGCTTCTCTTGAGGTTCATGGCA AGGATCAAGGTAGTACACAGAGACAGATCCGATTAGCATCTCGTGCAAATTCATTCCAGT CCTGTTAGTCCTTGACGCGAACCAAGCTGACCGAAGCCCCGGCTTCCGAGCCTCGCCCTC GTTACGGCTGGCTGAGATGGAGCCCGTGAGCGCGGCCACGGGGGCCATGGGGTCCGTCCT GGGGAAGCTGGGCGCCCTGTTTGCCGACGGCCACGAGGTTTCCAACGGCGACGTCGAGTC CCTCAAGGCGGAGCTCCAGGCGGTGCACGCCTTCCTCAAGGCAACATCCCAGGCCGAGGA CCCCGGCGAGCGAGGCAGGCGCTGGATGAAGGAGGCGCGGGAGTTGTCGTACGACGTGGA GGACGCGCTAGACAAGTTCATGCTCCATTCCCGCGACGGATCTGGTGCTGCTGATAACGA CTCGGACGGTTTCTCTGAAAAGATGAGCGCCTGGTTGTCGGAGGCGGCGGCTCGCCGTCG GACAGGCCAGGAGATCAGCGATGCCATCTCCAGGGCCGGCGGCGCCGAGGCGGAGGATCC CCGCCGGGACTGCTCTCTCTACAGAGAGACGGGTGAACCCGTGGGCGTCGACGGGCCGGC TGCTCAACTCATCAGAATGGTGGACGGAGGAGGGAAGCAATTGGATCTGGAGGTGGTTTC CATGGTCGGGTGTGGGGGGCTGGGCAAGACGACTCTTGCTCGTCGCGTCTACGACACAAT GGGTCAGCAGTTCGAGTGTCGGGCTTTCGTCTCCGTCTCCCGGAGACCTCATGTGGTTGC AATTTTGAGCGACATTCGGAGCCAACTGGGGTATGAGTATGCCCAAAGCTTAACTGAGGA TGCAAAATCGCTCCTTGACAGCATCTCCAATTTCCTTCAGGATAAAAGGTACTTCATCAT AGTAGATGATGTATGGGACGTTCAAACATGGGATATTCTCAAGGGTGCCTTTCCAAAAGG CAATTTTGGTAGCAGAATAATCACAACAACGCGGATACATGAGGTAGCCAAATCATGCTG TGCTTCATGTGGGGGGCGAGTTTATACAGTAAGCCCTCTCAGTGCCATCGATTCGGAAAG GTTGTTTTTTAAGTTGGTGTTCAATTCTGGTGAGCAATGCCCATCCCACCTGAAAAGAGT TTCTGACAAGATCTTGCAAAAATGTGGTGGTCTGCCGCTGGCAATTATTGCTATATCCGG TTTGCTGATTGCCAATACGCATGAAGATCAGTGGGAGCAAGTGTACAGTTCTATCAGGCA TGGACTTGGAAGCAACCCTGCCGTCGAAAGAACCATGAGGATTTTGTTGCTTGGCTACTT TGATCTTACTCCTTGCCTGAAATCTTGCCTGCTTTATCTCAGTGTATTCCCGGAAGGCTG TGCTGTCAAGAAGGAACGTCTGGTAATGAGATGGATTGCCGAGGGGTTCATTCCTGAAGA GCATGGGCACACCCTTTATGAATCAGGAGAGAGGTGTTTTAACGAGCTCATCGACCGGAA CCTGATCCAACCAGGGGAGATAAATAAGTTTGGGGAGGTGGAAAGCTGTCGAGTCCATGG TATAATTTTTGATTTCCTTGTATCCATGTCAAACCAAGACAATTTTGTTACTTTATTGGG TGTACCTGGTGTAAACCCTGAGCCAGGAAACAAAGTCCGTCGATTGTCTCTACAGGGTGA CAGTGAGATTCCAGCAGATCTTATTTTGTGTAAAGCCCGGTCACTTTCTGTTTTTGGTCA TTGTGTTAAAATGCCATCGCTCTGGAAGTCCAGACACTTGCATATTTTAGATTTGGTTTG TTCTGGGAAAGTAGAAGATCAACATCTTGCAGAAATAGGTGGTCTGTTCCATCTTAAGTA CCTGAGGCTCAAGTCAAAAGTTGGAAAGCTTCCCCAGCAAATAGCAGAGTTACAGTCCTT GGAGTCACTCGAGATATGTGAAAGCAACGCGACAACTGAGATTCCACCAGCCATCAATCA ACTTACACGGTTGGTACGTCTAGTTGTTCACGACGAAACTATATTACCGGATGAAATCGG TGGCCTCAAAGCATTGCAAGTGTTGAGAGGTATCAATGTCAACACCCAGTCAACCAACTT TGTTCGGCAACTTTGCCTACTATCAAACCTGAGGGAACTAAGCACAAGTTTTATCAACTA TTATGCGGGTGATAACTGGAAGGAGAATCAGGAAGAGATGGTCAATTCGATTTGTAGGCT AGGCAAAGCAAATCTTCATGTTCTACATATTACTATCAATGAGGGAGCAGATGAGATCTT TGAGGAATCATGGTGCCCTGCTCCACTTAGTCTCCGAGAACTCGTTGTCGAGGTGGGCGT AGTCTCGACTGTTCCGAGATGGATTGGCTCACTTGTCAACCTCCAGAGATTAAACCATCC CACGTTGATATGGACGAAATGAACATTTGGAAAAAATCAAGCAGGCTGATAGAAGCTGCA GTTAGAATGAGCAAGAAGATGGGTGAACATGATTTGTAGGGTGACAGTGGAAAGCCAAGA TGGGAGCAATATTGGTCCGAATTTTTTTTTTGATTGAATATCCGACTGAAGTTCTTGT