- Transcript HORVU7Hr1G096640.14
- Transcript IDHORVU7Hr1G096640.14
- Gene IDHORVU7Hr1G096640
Barley RTD
Exon Structure of HORVU7Hr1G096640.14
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 588700478 | 588696337 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g28460.1 | +2 | 3e-170 | 527 | 322/693 (46%) | protein|NBS-LRR disease resistance protein, putative, expressed |
| TAIR PP10 | AT3G07040 @ ARAPORT AT3G07040.1 @ TAIR |
+2 | 3e-39 | 159 | 166/603 (28%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926 |
| BRACH PP3 | Bradi3g34697.5.p | +2 | 0.0 | 978 | 498/647 (77%) | pacid=32815100 transcript=Bradi3g34697.5 locus=Bradi3g34697 ID=Bradi3g34697.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4142 bp)
>HORVU7Hr1G096640.14 4142 150831_barley_pseudomolecules AAAGAAATCTGGCCGCAATCGTTTGGGGTGAACACGGCGGAGCTCCTCGTCTCCAAATCC CTACACCCCTTGAGTCGTTCATCTGCGGAATCATCCTTGCTTCTCTTGAGGTTCATGGCA AGGATCAAGGTAGTACACAGAGACAGAGTACGCTCCTACCTACGTACTATCTTAAGTTGT CAACCATCAATTTTCTCCGTTTCTCCAATTTTCTTGTTGACTAACTCTGCCATGGTTTAG CTGCAGTCCGATTAGCATCTCGTGCAAATTCATTCCAGTCCTGTTAGTCCTTGACGCGAA CCAAGCTGACCGAAGCCCCGGCTTCCGAGCCTCGCCCTCGTTACGGCTGGCTGAGATGGA GCCCGTGAGCGCGGCCACGGGGGCCATGGGGTCCGTCCTGGGGAAGCTGGGCGCCCTGTT TGCCGACGGCCACGAGGTTTCCAACGGCGACGTCGAGTCCCTCAAGGCGGAGCTCCAGGC GGTGCACGCCTTCCTCAAGGCAACATCCCAGGCCGAGGACCCCGGCGAGCGAGGCAGGCG CTGGATGAAGGAGGCGCGGGAGTTGTCGTACGACGTGGAGGACGCGCTAGACAAGTTCAT GCTCCATTCCCGCGACGGATCTGGTGCTGCTGATAACGACTCGGACGGTTTCTCTGAAAA GATGAGCGCCTGGTTGTCGGAGGCGGCGGCTCGCCGTCGGACAGGCCAGGAGATCAGCGA TGCCATCTCCAGGGCCGGCGGCGCCGAGGCGGAGGATCCCCGCCGGGACTGCTCTCTCTA CAGAGAGACGGGTGAACCCGTGGGCGTCGACGGGCCGGCTGCTCAACTCATCAGAATGGT GGACGGAGGAGGGAAGCAATTGGATCTGGAGGTGGTTTCCATGGTCGGGTGTGGGGGGCT GGGCAAGACGACTCTTGCTCGTCGCGTCTACGACACAATGGGTCAGCAGTTCGAGTGTCG GGCTTTCGTCTCCGTCTCCCGGAGACCTCATGTGGTTGCAATTTTGAGCGACATTCGGAG CCAACTGGGGTATGAGTATGCCCAAAGCTTAACTGAGGATGCAAAATCGCTCCTTGACAG CATCTCCAATTTCCTTCAGGATAAAAGGTACTGTGCGCCGGTTCAGATAGCAAGAGGAAA ATTTACACTTTTATAGCATTTCATCTTCCATGTTTTCAGGAAAACATTGATTTTTTATAT ATTAATCAGCTATAGGATGTGGCTATTTTATCTTCATATATGTTCAAGCGACATGAGATC CGTGTCAGAGAATATACATTTGCTAGATACAGATATAGACCAAGAAAGGTGGTCCGGTCT AAGTTCCTTCAGTTTGTATCCAAGTGTAACTCATTCCGCACTGCCGTGTTTTTGAATATT TCATGCCAATAATGTTAACTTGATGACTTTGTGACACACTTTTCACTGAACTGCACACTA AGTTAGCTCCTATTTTTCAACAAGTTTTGTATAAAAACTGCTACCTTTTCGAGAATACAA GTTAAATTTTGAAGCTAACATTAAGGAGATAAGTTAGGCTATACTGCTGAATCCATGAAA CTTTGTACAGACTACTAGATATTTCCCCTTGTTTTGTGGAATTTTACCGGACTGATCACA CTTTGCCTGCTTACATTTTCAGATGGTAGTAGAAGTTATGATAGTGTTTAGGAGTGTTTC TTTATTTTTGGTGTCAATGATTGACATTGCAAAATCATGTACCAGGTACTTCATCATAGT AGATGATGTATGGGACGTTCAAACATGGGATATTCTCAAGGGTGCCTTTCCAAAAGGCAA TTTTGGTAGCAGAATAATCACAACAACGCGGATACATGAGGTAGCCAAATCATGCTGTGC TTCATGTGGGGGGCGAGTTTATACAGTAAGCCCTCTCAGTGCCATCGATTCGGAAAGGTT GTTTTTTAAGTTGGTGTTCAATTCTGGTGAGCAATGCCCATCCCACCTGAAAAGAGTTTC TGACAAGATCTTGCAAAAATGTGGTGGTCTGCCGCTGGCAATTATTGCTATATCCGGTTT GCTGATTGCCAATACGCATGAAGATCAGTGGGAGCAAGTGTACAGTTCTATCAGGCATGG ACTTGGAAGCAACCCTGCCGTCGAAAGAACCATGAGGATTTTGTTGCTTGGCTACTTTGA TCTTACTCCTTGCCTGAAATCTTGCCTGCTTTATCTCAGTGTATTCCCGGAAGGCTGTGC TGTCAAGAAGGAACGTCTGGTAATGAGATGGATTGCCGAGGGGTTCATTCCTGAAGAGCA TGGGCACACCCTTTATGAATCAGGAGAGAGGTGTTTTAACGAGCTCATCGACCGGAACCT GATCCAACCAGGGGAGATAAATAAGTTTGGGGAGGTGGAAAGCTGTCGAGTCCATGGTAT AATTTTTGATTTCCTTGTATCCATGTCAAACCAAGACAATTTTGTTACTTTATTGGGTGT ACCTGGTGTAAACCCTGAGCCAGGAAACAAAGTCCGTCGATTGTCTCTACAGGGTGACAG TGAGATTCCAGCAGATCTTATTTTGTGTAAAGCCCGGTCACTTTCTGTTTTTGGTCATTG TGTTAAAATGCCATCGCTCTGGAAGTCCAGACACTTGCATATTTTAGATTTGGTTTGTTC TGGGAAAGTAGAAGATCAACATCTTGCAGAAATAGGTGGTCTGTTCCATCTTAAGTACCT GAGGCTCAAGTCAAAAGTTGGAAAGCTTCCCCAGCAAATAGCAGAGTTACAGTCCTTGGA GTCACTCGAGATATGTGAAAGCAACGCGACAACTGAGATTCCACCAGCCATCAATCAACT TACACGGTTGGTACGTCTAGTTGTTCACGACGAAACTATATTACCGGATGAAATCGGTGG CCTCAAAGCATTGCAAGTGTTGAGAGGTATCAATGTCAACACCCAGTCAACCAACTTTGT TCGGCAACTTTGCCTACTATCAAACCTGAGGGAACTAAGCACAAGTTTTATCAACTATTA TGCGGGTGATAACTGGAAGGAGAATCAGGAAGAGATGGTCAATTCGATTTGTAGGCTAGG CAAAGCAAATCTTCATGTTCTACATATTACTATCAATGAGGGAGCAGATGAGATCTTTGA GGAATCATGGTGCCCTGCTCCACTTAGTCTCCGAGAACTCGTTGTCGAGGTGGGCGTAGT CTCGACTGTTCCGAGATGGATTGGCTCACTTGTCAACCTCCAGAGATTAGCCGTGCTTAT GTGGGAAGTTGGGGAGGAGGATGTGGTGATCCTGGGAAGCCTACCTGATCTGCGCCATCT TAGCCTCACTGCACTGGCAGCTGGGTCAAAAGAAGGGCGGCTTAGAGTCGCCCAAAGCCA TGGATTCCCTTCCTTGATCAGTTTCCAGATCGGCGGAGAAGAGTGTGCACTGGGGTTAGT TTTTGAAGCTGGTTCCATGCCGAAGCTACAAAATCTTGAGCTTGAGTTCGACGCAGAGGA AACTAGTTCTGTGACTGATGGTGAGTTTGATTTTGGCATCAAGCACCTCCCCTGCCTGAC AAGCACATCAGTTCGCTCTACTTGCGACGAATCCATTCGTCCAACATTGGAGGCCGCCAT GGAGAGATGCATCAAGGACCATCCCAACCATCCCACGTTGATATGGACGAAATGAACATT TGTAAGACACTGATTGCCCTTTCTAAAGAGTTGCCACTTAAGAGTATGTATATGTAATTT ATTTTTTCTATGTATCCTCTCACAACATCTCTTTCCATATGTTTTTTTTCCTACCTCTTT CAGGGAAAAAATCAAGCAGGCTGATAGAAGCTGCAGTTAGAATGAGCAAGAAGATGGGTG AACATGATTTGTAGGGTGACAGTGGAAAGCCAAGATGGGAGCAATATTGGTCCGAATTTT TTTTTTGATTGAATATCCGACTGAAGTTCTTGTTACATTCAGTCAGTGGTATTCTATGTA TCCAAAAGTCAAATGAGGGCGTGTTCCTATTTTTCCTGAAATGTTTCAGACACGAGCAAT CAGCGTGGTGGAACGCATGACTGATGGCTATCATTTTCTTTTTGTTCCTTCGTTGTTTTT TCGTTGAAGTGAGCAAGTGACATTTTTTAATTTTCTCAAGTACTCCCTCTGTCATGATCT AC