- Gene HORVU7Hr1G062930
- Gene IDHORVU7Hr1G062930
- Location chr7H: 305302265 - 305306845
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u52907 | 95.8 | - | - | 4546 | -165 | Partial-Overlap |
Transcripts from Gene HORVU7Hr1G062930
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU7Hr1G062930.1 | 1742 | gene=HORVU7Hr1G062930 CDS=2-1405 |
| HORVU7Hr1G062930.2 | 1772 | gene=HORVU7Hr1G062930 CDS=2-727 |
| HORVU7Hr1G062930.3 | 1736 | gene=HORVU7Hr1G062930 CDS=2-1402 |
| HORVU7Hr1G062930.4 | 2772 | gene=HORVU7Hr1G062930 CDS=2033-2698 |
| HORVU7Hr1G062930.5 | 1456 | gene=HORVU7Hr1G062930 CDS=2-733 |
| HORVU7Hr1G062930.6 | 1209 | gene=HORVU7Hr1G062930 CDS=1-1209 |
| HORVU7Hr1G062930.7 | 1191 | gene=HORVU7Hr1G062930 CDS=1-1191 |
| HORVU7Hr1G062930.8 | 1227 | gene=HORVU7Hr1G062930 CDS=1-1227 |
| HORVU7Hr1G062930.9 | 1728 | gene=HORVU7Hr1G062930 CDS=3-1208 |
| HORVU7Hr1G062930.10 | 1743 | gene=HORVU7Hr1G062930 CDS=3-740 |
| HORVU7Hr1G062930.11 | 796 | gene=HORVU7Hr1G062930 CDS=364-795 |
Exon Structure of HORVU7Hr1G062930
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g29370.1 | +2 | 0.0 | 543 | 265/304 (87%) | protein|peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed |
| TAIR PP10 | AT3G01480 @ ARAPORT AT3G01480.1 @ TAIR |
+2 | 2e-166 | 492 | 233/303 (77%) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437 |
| BRACH PP3 | Bradi3g34940.1.p | +2 | 0.0 | 557 | 274/304 (90%) | pacid=32818759 transcript=Bradi3g34940.1 locus=Bradi3g34940 ID=Bradi3g34940.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons