- Transcript HORVU7Hr1G062930.10
- Transcript IDHORVU7Hr1G062930.10
- Gene IDHORVU7Hr1G062930
Barley RTD
Exon Structure of HORVU7Hr1G062930.10
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 305303888 | 305303294 | - |
| chr7H | 2 | 305304132 | 305303990 | - |
| chr7H | 3 | 305304585 | 305304317 | - |
| chr7H | 4 | 305305059 | 305304860 | - |
| chr7H | 5 | 305305504 | 305305214 | - |
| chr7H | 6 | 305306727 | 305306483 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g29370.1 | +3 | 0.0 | 576 | 283/339 (83%) | protein|peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed |
| TAIR PP10 | AT3G01480 @ ARAPORT AT3G01480.1 @ TAIR |
+3 | 1e-170 | 491 | 241/340 (71%) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437 |
| BRACH PP3 | Bradi3g34940.1.p | +3 | 0.0 | 613 | 301/339 (89%) | pacid=32818759 transcript=Bradi3g34940.1 locus=Bradi3g34940 ID=Bradi3g34940.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1743 bp)
>HORVU7Hr1G062930.10 1743 150831_barley_pseudomolecules ATCGCAACCCGCCCCCCGCTCCTATGGCTCCATATTTTGTCCGGCCTTATCCACATCCCG AAACCACCACCAGCTCCTCCGCTTCCATCGTTTTTCCTACCACCAACGCCCGCTTCACCG GAACCGTACCCCCACCCAACCGCATGGCCGCGGCGCTCGCCTCCTCCCGCTGCTGCCGCC GCCCTTCGCTTCTTAACAGTGATCGTCGCCGCCGCTCCGTCGTCCGGTGCGCGCTCTCCG GCGAGAAAGGAAACTCATTTAGCTGGAACAAATGTGCAATTTCTATAGCATTGTCTGTTG GATTAATTACTTGCCCACCAACATTTGGATGGTCGGCCCATGCTTTTCCGCTCGAACCTG TAATCCCTGATATTTCAGTTCTGATTTCTGGACCTCCCATTAAAGATCCAGGGGCTTTGT TGAGATATGCTTTGCCCATAGATAATAAAGCTATTCGTGAAGTTCAAAAACCGTTAGAGG ATATCACCGATAGTCTCAAAGTTTCTGGTGTTAGAGCGTTGGATTCAGTTGAAAGAAATG TGAGGCAGGCCTCGAGAGCGCTGACTAATGGGAGGAGTTTAATACTTACTGGTCTTGCTG AATCAAAAAGAGAAAATGGAGAAAAAATATTGGATAAATTAGCTGTTGGACTTGAAGAGC TTCAACGAATTATTGAGGATAGAAACAGGAATGCGGTAGCTCCAAAGCAGAAAGAGCTTC TCAATTATGTTGGAATCTGAGATCTTCCTGGGACATTGCATTTCTGCAGTGTAGAAGAAG ATATGGTCGATGGCTTCCCCTATGAAGTACCAGAAGAATACAACAATATGCCTCTTCTTA AAGGAAGAGCTACTGTGGATATGACGGTTAAGATTAAAGATAATCCAAACGTAGAAGATT GTGTATTTCGGATAGTTCTGGATGGATATAATGCTCCTGTGACTTCTGGGAACTTCGTAG ATCTGGTGGAACGGAAGTTCTATGATGGCATGGAAATCCAAAGAGCTGATGGTTTTGTTG TTCAGACGGGAGATCCTGAGGGGCCAGCCGACGGTTTTATTGATCCCAGTACTGGCAAGA GTCGTACCATACCTCTTGAGATAATGGTTGATGGTGACAAGGCGCCTATATACGGTGAAA CACTTGAGGAACTTGGCCTTTACAAGGCTCAAACAAAGCTTCCTTTTAATGCATTTGGAA CGATGGCAATGGCTAGAGAAGTAAGGCTCACCTAGACTCTTTAGTTTTAACATATCAAGG ATATGCCAAAATAATTATTACATCCTCCAGAAATATAAAGTGCACATGCTTCCCCAAATT TATCGTTGATCACGAATTTGTTCAGCAATATGTGATACAAAGTTGATACTCCCTCTGTCC CATAATATAAGATGTTAATACAACCATATTGGTTCATTTATAGTTGGATTATTCTTCGGA GGTTAAACTTCAATAACGGGTACGTCTTATGTTTCTGGATGGAGGGAGTAACATTTTCTT AGTTGTAACCAAGGTTTTTTCTTCTTCTTCTTCTCGATAATGTTTTTTTGGATGGGCTAG AAGAATTGGTTTCTGGAAAATATCAGTATTCAGACAAAATTTGAAATCATTTTGTTTTGG GACAAAATATAAGTTTGCAGCCTGACCTACATATAGCTGCGCGTGTCCAAGCAGTTAGTA CAATTCATCTGTTCCTCAAAGTAAGTCTCGGGTTCGAGTTTTCTCTGCTGCACAACCGCG AAG