- Transcript HORVU7Hr1G062930.4
- Transcript IDHORVU7Hr1G062930.4
- Gene IDHORVU7Hr1G062930
Barley RTD
Exon Structure of HORVU7Hr1G062930.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 305302829 | 305302528 | - |
| chr7H | 2 | 305303888 | 305303817 | - |
| chr7H | 3 | 305304132 | 305303990 | - |
| chr7H | 4 | 305304585 | 305304317 | - |
| chr7H | 5 | 305306845 | 305304860 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g29370.1 | +2 | 0.0 | 543 | 265/304 (87%) | protein|peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed |
| TAIR PP10 | AT3G01480 @ ARAPORT AT3G01480.1 @ TAIR |
+2 | 2e-166 | 492 | 233/303 (77%) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437 |
| BRACH PP3 | Bradi3g34940.1.p | +2 | 0.0 | 557 | 274/304 (90%) | pacid=32818759 transcript=Bradi3g34940.1 locus=Bradi3g34940 ID=Bradi3g34940.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2772 bp)
>HORVU7Hr1G062930.4 2772 150831_barley_pseudomolecules ACGATGTTTTGATAGAATAGTTTATAGCCTACCAAAACTCATACAGTATATTTTTCGAAC GGAGGTTGTATAAGTTAGTCTTATCTATGTCTTTTTGACCTCAGCATCTCCTCCACCAAT CGCAACCCGCCCCCCGCTCCTATGGCTCCATATTTTGTCCGGCCTTATCCACATCCCGAA ACCACCACCAGCTCCTCCGCTTCCATCGTTTTTCCTACCACCAACGCCCGCTTCACCGGA ACCGTACCCCCACCCAACCGCATGGCCGCGGCGCTCGCCTCCTCCCGCTGCTGCCGCCGC CCTTCGCTTCTTAACAGTGATCGTCGCCGCCGCTCCGTCGTCCGGTGCGCGCTCTCCGGC GAGGTTAGGATCTTACAACTCATTACGGTGGCTCCTGGAAGATAGCTCCTGGTGGACATT CTGCTTTTGGATGATGCATGCCAATGTGGCTCAGTATTGCTGCATTTCTAAATACAGTTG TGCCCGGGTATTTATTGATGCGATGGGATTGTTTTTAATTATGTGGTGAATGTAGATCTT GGGTGGGTGGGTATAACTATGCAATTTGGCCTGAAAGTGAAAGATGGTACCGAATGTTGG TGCACAAACACAACCAATGTTACTGTTTTCTTGGATGACAAAAAGTTGAATATTACTTTA AAATGAAAGTTAGAAGAAATCATGTGTAAATTTAGTTAATGTTGCTGATGAATTAGGGAT GTATGTTATATGCACTAAATATAGTTTGAGAAAATGGGGGATTTTCGGAAAACATGAATC TGGGGGCAGGAGGGGTAGCAATTCAGCTTCTTCTGGACATCAATATCTTCGGGTCTTGCT TGATATTATAATTTGAAGTTCATGTGAAAATGGAATAACTGTAACCAAATGATAATTTTG TGTAATTCATGAAAATGGTTCGAGTACTGAGTTCTTCGGAAGGATTGGAACGTGTAGAAT TGATTTTTTTTGTCTTCCCAAAGTAGCTTCTTTGGTTATCAGATTTCTCCGTTTCTGCCC TTGGATATTTGCGCTGATATTAGATATTGTAGCGCATATGGAACCACCCAGTAAGGCAGT TTACATATATGACCCTTAATTTTCTTTCCTGGATATATTTTGAAGAATGCATGCTTTGGA AGGTACAACTTATGTTGAGGATATGTATTATCTGTATCTATTAACTTATATTTGTTTCAT GATTTTGCTGTTTTAATTGTCTTCTTTGAAAGGCTTGGTTGTTGTTGTAATTGTCTTCTT TGAGATTAGTTATTGCAACTGACTATAGGTTTATTCTATGAGCTGCTCTTCTCTAATTTC TAGCTACTTCAATCTCTGCAGAAAGGAAACTCATTTAGCTGGAACAAATGTGCAATTTCT ATAGCATTGTCTGTTGGATTAATTACTTGCCCACCAACATTTGGATGGTCGGCCCATGCT TTTCCGCTCGAACCTGTAATCCCTGATATTTCAGTTCTGATTTCTGGACCTCCCATTAAA GATCCAGGGGCTTTGTTGAGATATGCTTTGCCCATAGATAATAAAGCTATTCGTGAAGTT CAAAAACCGTTAGAGGATATCACCGATAGTCTCAAAGTTTCTGGTGTTAGAGCGTTGGAT TCAGTTGAAAGAGTAAGTCATCCATTCAAGATGCCTAGTAACAAAGATCTATATTTTCGC TCTTTCTTTAAAGAAGTAGGAAGCAGCTATATATTGTCTCAGGTTTCTTCAATCTACTTT ATGCATATGGATCCTGGGATTTTTTTAATCTTTCTTCAAATTGTAGAATGTGAGGCAGGC CTCGAGAGCGCTGACTAATGGGAGGAGTTTAATACTTACTGGTCTTGCTGAATCAAAAAG AGAAAATGGAGAAAAAATATTGGATAAATTAGCTGTTGGACTTGAAGAGCTTCAACGAAT TATTGAGGATAGAAACAGGAATGCGGTAGCTCCAAAGCAGAAAGAGCTTCTCAATTATGT TGGAATCTGAGATCTTCCTGGGACATTGCATTTCTGCAGTGTAGAAGAAGATATGGTCGA TGGCTTCCCCTATGAAGTACCAGAAGAATACAACAATATGCCTCTTCTTAAAGGAAGAGC TACTGTGGATATGACGGTTAAGATTAAAGATAATCCAAACGTAGAAGATTGTGTATTTCG GATAGTTCTGGATGGATATAATGCTCCTGTGACTTCTGGGAACTTCGTAGATCTGGTGGA ACGGAAGTTCTATGATGGCATGGAAATCCAAAGAGCTGATGGTTTTGTTGTTCAGACGGG AGATCCTGAGGGGCCAGCCGACGGTTTTATTGATCCCAGTACTGGCAAGAGTCGTACCAT ACCTCTTGAGATAATGGTTGATGGTGACAAGGCGCCTATATACGGTGAAACACTTGAGGA ACTTGGCCTTTACAAGGCTCAAACAAAGCTTCCTTTTAATGCATTTGGAACGATGGCAAT GGCTAGAGAAGAATTTGATGACAACTCCGCTTCTAGTCAAGTCTTCTGGCTCTTGAAAGA AAGTGAGTTGACGCCAAGTAATTCCAATATATTGGATGGGCGGTATTCGGTGTTTGGATA CGTAACCGAGAATGAGGATTTCTTGGCTGATCTCAAGGTGGGGGACGTTATTGAATCAAT CCAGGTTGTCTCAGGCCTAGACAATCTTGTCAACCCGAGCTACAAGATTGTAGGGTAGCA TGTTTCCGTATATAAGAATTCCTTGACATGCAATTATTTTACGGTATTAAAACCGATGTC TTGTGCTGGAAT