Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G062930.11

ChromosomeExonStartStopDirection
chr7H1305303888305303822-
chr7H2305304132305303990-
chr7H3305304585305304317-
chr7H4305305059305304860-
chr7H5305305308305305214-
chr7H6305305412305305391-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g29370.2 +1 2e-159 450 221/257 (86%) protein|peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
TAIR PP10 AT3G01480 @ ARAPORT
AT3G01480.1 @ TAIR		 +1 9e-143 407 193/257 (75%) Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437
BRACH PP3 Bradi3g34940.1.p +1 2e-164 462 229/257 (89%) pacid=32818759 transcript=Bradi3g34940.1 locus=Bradi3g34940 ID=Bradi3g34940.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (796 bp)

>HORVU7Hr1G062930.11 796 150831_barley_pseudomolecules
CCATGCTTTTCCGCTCGAACCTATAATAAAGCTATTCGTGAAGTTCAAAAACCGTTAGAG
GATATCACCGATAGTCTCAAAGTTTCTGGTGTTAGAGCGTTGGATTCAGTTGAAAGAAAT
GTGAGGCAGGCCTCGAGAGCGCTGACTAATGGGAGGAGTTTAATACTTACTGGTCTTGCT
GAATCAAAAAGAGAAAATGGAGAAAAAATATTGGATAAATTAGCTGTTGGACTTGAAGAG
CTTCAACGAATTATTGAGGATAGAAACAGGAATGCGGTAGCTCCAAAGCAGAAAGAGCTT
CTCAATTATGTTGGAATCTGAGATCTTCCTGGGACATTGCATTTCTGCAGTGTAGAAGAA
GATATGGTCGATGGCTTCCCCTATGAAGTACCAGAAGAATACAACAATATGCCTCTTCTT
AAAGGAAGAGCTACTGTGGATATGACGGTTAAGATTAAAGATAATCCAAACGTAGAAGAT
TGTGTATTTCGGATAGTTCTGGATGGATATAATGCTCCTGTGACTTCTGGGAACTTCGTA
GATCTGGTGGAACGGAAGTTCTATGATGGCATGGAAATCCAAAGAGCTGATGGTTTTGTT
GTTCAGACGGGAGATCCTGAGGGGCCAGCCGACGGTTTTATTGATCCCAGTACTGGCAAG
AGTCGTACCATACCTCTTGAGATAATGGTTGATGGTGACAAGGCGCCTATATACGGTGAA
ACACTTGAGGAACTTGGCCTTTACAAGGCTCAAACAAAGCTTCCTTTTAATGCATTTGGA
ACGATGGCAATGGCTA