- Transcript HORVU7Hr1G062930.9
- Transcript IDHORVU7Hr1G062930.9
- Gene IDHORVU7Hr1G062930
Barley RTD
Exon Structure of HORVU7Hr1G062930.9
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 305303888 | 305303282 | - |
| chr7H | 2 | 305304132 | 305303990 | - |
| chr7H | 3 | 305304552 | 305304317 | - |
| chr7H | 4 | 305305059 | 305304860 | - |
| chr7H | 5 | 305305504 | 305305214 | - |
| chr7H | 6 | 305306733 | 305306483 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g29370.1 | +3 | 0.0 | 585 | 283/328 (86%) | protein|peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed |
| TAIR PP10 | AT3G01480 @ ARAPORT AT3G01480.1 @ TAIR |
+3 | 2e-173 | 498 | 241/329 (73%) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437 |
| BRACH PP3 | Bradi3g34940.1.p | +3 | 0.0 | 622 | 301/328 (92%) | pacid=32818759 transcript=Bradi3g34940.1 locus=Bradi3g34940 ID=Bradi3g34940.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1728 bp)
>HORVU7Hr1G062930.9 1728 150831_barley_pseudomolecules CCACCAATCGCAACCCGCCCCCCGCTCCTATGGCTCCATATTTTGTCCGGCCTTATCCAC ATCCCGAAACCACCACCAGCTCCTCCGCTTCCATCGTTTTTCCTACCACCAACGCCCGCT TCACCGGAACCGTACCCCCACCCAACCGCATGGCCGCGGCGCTCGCCTCCTCCCGCTGCT GCCGCCGCCCTTCGCTTCTTAACAGTGATCGTCGCCGCCGCTCCGTCGTCCGGTGCGCGC TCTCCGGCGAGAAAGGAAACTCATTTAGCTGGAACAAATGTGCAATTTCTATAGCATTGT CTGTTGGATTAATTACTTGCCCACCAACATTTGGATGGTCGGCCCATGCTTTTCCGCTCG AACCTGTAATCCCTGATATTTCAGTTCTGATTTCTGGACCTCCCATTAAAGATCCAGGGG CTTTGTTGAGATATGCTTTGCCCATAGATAATAAAGCTATTCGTGAAGTTCAAAAACCGT TAGAGGATATCACCGATAGTCTCAAAGTTTCTGGTGTTAGAGCGTTGGATTCAGTTGAAA GAAATGTGAGGCAGGCCTCGAGAGCGCTGACTAATGGGAGGAGTTTAATACTTACTGGTC TTGCTGAATCAAAAAGAGAAAATGGAGAAAAAATATTGGATAAATTAGCTGTTGGACTTG AAGAGCTTCAACGAATTATTGAGGATAGAAACAGGAATGCGGTAGCTCCAAAGCAGAAAG AGCTTCTCAATTATGTTGGAATTGTAGAAGAAGATATGGTCGATGGCTTCCCCTATGAAG TACCAGAAGAATACAACAATATGCCTCTTCTTAAAGGAAGAGCTACTGTGGATATGACGG TTAAGATTAAAGATAATCCAAACGTAGAAGATTGTGTATTTCGGATAGTTCTGGATGGAT ATAATGCTCCTGTGACTTCTGGGAACTTCGTAGATCTGGTGGAACGGAAGTTCTATGATG GCATGGAAATCCAAAGAGCTGATGGTTTTGTTGTTCAGACGGGAGATCCTGAGGGGCCAG CCGACGGTTTTATTGATCCCAGTACTGGCAAGAGTCGTACCATACCTCTTGAGATAATGG TTGATGGTGACAAGGCGCCTATATACGGTGAAACACTTGAGGAACTTGGCCTTTACAAGG CTCAAACAAAGCTTCCTTTTAATGCATTTGGAACGATGGCAATGGCTAGAGAAGTAAGGC TCACCTAGACTCTTTAGTTTTAACATATCAAGGATATGCCAAAATAATTATTACATCCTC CAGAAATATAAAGTGCACATGCTTCCCCAAATTTATCGTTGATCACGAATTTGTTCAGCA ATATGTGATACAAAGTTGATACTCCCTCTGTCCCATAATATAAGATGTTAATACAACCAT ATTGGTTCATTTATAGTTGGATTATTCTTCGGAGGTTAAACTTCAATAACGGGTACGTCT TATGTTTCTGGATGGAGGGAGTAACATTTTCTTAGTTGTAACCAAGGTTTTTTCTTCTTC TTCTTCTCGATAATGTTTTTTTGGATGGGCTAGAAGAATTGGTTTCTGGAAAATATCAGT ATTCAGACAAAATTTGAAATCATTTTGTTTTGGGACAAAATATAAGTTTGCAGCCTGACC TACATATAGCTGCGCGTGTCCAAGCAGTTAGTACAATTCATCTGTTCCTCAAAGTAAGTC TCGGGTTCGAGTTTTCTCTGCTGCACAACCGCGAAGAGCCCACATGTG