- Gene BART1_0-u52907
- Gene IDBART1_0-u52907
- Location chr7H: 305302065 - 305306810
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU7Hr1G062930 | 95.8 | - | - | 4546 | -165 | Partial-Overlap |
Transcripts from Gene BART1_0-u52907
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u52907.001 | 2068 | 2068 bp MSTRG.52907.1 MSTRG.52907 |
| BART1_0-u52907.002 | 1954 | 1954 bp MSTRG.52907.2 MSTRG.52907 |
| BART1_0-u52907.003 | 2027 | 2027 bp MSTRG.52907.3 MSTRG.52907 |
| BART1_0-u52907.004 | 2033 | 2033 bp MSTRG.52907.4 MSTRG.52907 |
| BART1_0-u52907.005 | 1738 | 1738 bp MSTRG.52907.5 MSTRG.52907 |
| BART1_0-u52907.006 | 2103 | 2103 bp MSTRG.52907.6 MSTRG.52907 |
| BART1_0-u52907.007 | 1807 | 1807 bp MSTRG.52907.7 MSTRG.52907 |
| BART1_0-u52907.008 | 1849 | 1849 bp MSTRG.52907.8 MSTRG.52907 |
| BART1_0-u52907.009 | 1840 | 1840 bp MSTRG.52907.9 MSTRG.52907 |
| BART1_0-u52907.010 | 1862 | 1862 bp MSTRG.52907.10 MSTRG.52907 |
| BART1_0-u52907.011 | 2012 | 2012 bp MSTRG.52907.11 MSTRG.52907 |
| BART1_0-u52907.012 | 1814 | 1814 bp MSTRG.52907.12 MSTRG.52907 |
| BART1_0-u52907.013 | 1568 | 1568 bp MSTRG.52907.13 MSTRG.52907 |
| BART1_0-u52907.014 | 1615 | 1615 bp MSTRG.52907.14 MSTRG.52907 |
| BART1_0-u52907.015 | 1383 | 1383 bp MSTRG.52907.15 MSTRG.52907 |
| BART1_0-u52907.016 | 1248 | 1248 bp MSTRG.52907.16 MSTRG.52907 |
| BART1_0-u52907.017 | 1493 | 1493 bp MSTRG.52907.17 MSTRG.52907 |
| BART1_0-u52907.018 | 1812 | 1812 bp MSTRG.52907.18 MSTRG.52907 |
| BART1_0-u52907.019 | 1491 | 1491 bp MSTRG.52907.19 MSTRG.52907 |
| BART1_0-u52907.020 | 2966 | 2966 bp MSTRG.52907.20 MSTRG.52907 |
Exon Structure of BART1_0-u52907
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g29370.1 | +3 | 5e-102 | 260 | 128/158 (81%) | protein|peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed |
| TAIR PP10 | AT3G01480 @ ARAPORT AT3G01480.1 @ TAIR |
+3 | 2e-89 | 231 | 108/158 (68%) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437 |
| BRACH PP3 | Bradi3g34940.1.p | +3 | 1e-105 | 269 | 133/158 (84%) | pacid=32818759 transcript=Bradi3g34940.1 locus=Bradi3g34940 ID=Bradi3g34940.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0009570 | chloroplast stroma |
| GO:0090502 | RNA phosphodiester bond hydrolysis, endonucleolytic |
| GO:0009534 | chloroplast thylakoid |
| GO:0008643 | carbohydrate transport |
| GO:0000413 | protein peptidyl-prolyl isomerization |
| GO:0042742 | defense response to bacterium |
| GO:0009535 | chloroplast thylakoid membrane |
| GO:0003676 | nucleic acid binding |
| GO:0004523 | RNA-DNA hybrid ribonuclease activity |
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity |
| GO:0031977 | thylakoid lumen |
| GO:0016021 | integral component of membrane |
| GO:0055035 | plastid thylakoid membrane |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons