- Transcript BART1_0-u52907.011
- Transcript IDBART1_0-u52907.011
- Gene IDBART1_0-u52907
Barley RTD
Exon Structure of BART1_0-u52907.011
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 305302829 | 305302264 | - |
| chr7H | 2 | 305303888 | 305303578 | - |
| chr7H | 3 | 305304132 | 305303990 | - |
| chr7H | 4 | 305304585 | 305304317 | - |
| chr7H | 5 | 305305059 | 305304860 | - |
| chr7H | 6 | 305305504 | 305305214 | - |
| chr7H | 7 | 305306714 | 305306483 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.146055 | 0 | 0.0000000155319 |
| morex | ETI | 0.959945 | 0.999997 | 0 |
| morex | LEA | 0.289071 | 4.13785 | 0.917149 |
| morex | EPI | 0.826695 | 0.159942 | 0.0000307309 |
| morex | ROO | 0 | 0 | 0.235709 |
| morex | ROO2 | 0 | 0.000000197082 | 0.0000265284 |
| morex | NOD | 3.20447 | 1.45099 | 5.01687 |
| morex | RAC | 0 | 0.418786 | 0 |
| morex | INF1 | 3.71892 | 0 | 2.53951 |
| morex | INF2 | 0 | 0.000604354 | 3.33403 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0.162494 | 0.629102 |
| morex | LEM | 0.0000004972 | 0 | 1.23616 |
| morex | LOD | 1.39922 | 1.28985 | 0 |
| morex | PAL | 4.61661 | 0.786024 | 1.81518 |
| morex | SEN | 4.03303 | 4.42495 | 4.02216 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g29370.1 | +2 | 0.0 | 577 | 283/339 (83%) | protein|peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed |
| TAIR PP10 | AT3G01480 @ ARAPORT AT3G01480.1 @ TAIR |
+2 | 3e-169 | 491 | 241/340 (71%) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437 |
| BRACH PP3 | Bradi3g34940.1.p | +2 | 0.0 | 613 | 301/339 (89%) | pacid=32818759 transcript=Bradi3g34940.1 locus=Bradi3g34940 ID=Bradi3g34940.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2012 bp)
>BART1_0-u52907.011 2012 150831_barley_pseudomolecules CCCCGCTCCTATGGCTCCATATTTTGTCCGGCCTTATCCACATCCCGAAACCACCACCAG CTCCTCCGCTTCCATCGTTTTTCCTACCACCAACGCCCGCTTCACCGGAACCGTACCCCC ACCCAACCGCATGGCCGCGGCGCTCGCCTCCTCCCGCTGCTGCCGCCGCCCTTCGCTTCT TAACAGTGATCGTCGCCGCCGCTCCGTCGTCCGGTGCGCGCTCTCCGGCGAGAAAGGAAA CTCATTTAGCTGGAACAAATGTGCAATTTCTATAGCATTGTCTGTTGGATTAATTACTTG CCCACCAACATTTGGATGGTCGGCCCATGCTTTTCCGCTCGAACCTGTAATCCCTGATAT TTCAGTTCTGATTTCTGGACCTCCCATTAAAGATCCAGGGGCTTTGTTGAGATATGCTTT GCCCATAGATAATAAAGCTATTCGTGAAGTTCAAAAACCGTTAGAGGATATCACCGATAG TCTCAAAGTTTCTGGTGTTAGAGCGTTGGATTCAGTTGAAAGAAATGTGAGGCAGGCCTC GAGAGCGCTGACTAATGGGAGGAGTTTAATACTTACTGGTCTTGCTGAATCAAAAAGAGA AAATGGAGAAAAAATATTGGATAAATTAGCTGTTGGACTTGAAGAGCTTCAACGAATTAT TGAGGATAGAAACAGGAATGCGGTAGCTCCAAAGCAGAAAGAGCTTCTCAATTATGTTGG AATCTGAGATCTTCCTGGGACATTGCATTTCTGCAGTGTAGAAGAAGATATGGTCGATGG CTTCCCCTATGAAGTACCAGAAGAATACAACAATATGCCTCTTCTTAAAGGAAGAGCTAC TGTGGATATGACGGTTAAGATTAAAGATAATCCAAACGTAGAAGATTGTGTATTTCGGAT AGTTCTGGATGGATATAATGCTCCTGTGACTTCTGGGAACTTCGTAGATCTGGTGGAACG GAAGTTCTATGATGGCATGGAAATCCAAAGAGCTGATGGTTTTGTTGTTCAGACGGGAGA TCCTGAGGGGCCAGCCGACGGTTTTATTGATCCCAGTACTGGCAAGAGTCGTACCATACC TCTTGAGATAATGGTTGATGGTGACAAGGCGCCTATATACGGTGAAACACTTGAGGAACT TGGCCTTTACAAGGCTCAAACAAAGCTTCCTTTTAATGCATTTGGAACGATGGCAATGGC TAGAGAAGTAAGGCTCACCTAGACTCTTTAGTTTTAACATATCAAGGATATGCCAAAATA ATTATTACATCCTCCAGAAATATAAAGTGCACATGCTTCCCCAAATTTATCGTTGATCAC GAATTTGTTCAGCAATATGTGATACAAAGTTGATACTCCCTCTGTCCCATAATATAAGAT GTTAATACAACCATATTGGTTCATTTATAGTTGGATTATTCTTCGGAGGTTAAACTTCAA TAACGGGAATTTGATGACAACTCCGCTTCTAGTCAAGTCTTCTGGCTCTTGAAAGAAAGT GAGTTGACGCCAAGTAATTCCAATATATTGGATGGGCGGTATTCGGTGTTTGGATACGTA ACCGAGAATGAGGATTTCTTGGCTGATCTCAAGGTGGGGGACGTTATTGAATCAATCCAG GTTGTCTCAGGCCTAGACAATCTTGTCAACCCGAGCTACAAGATTGTAGGGTAGCATGTT TCCGTATATAAGAATTCCTTGACATGCAATTATTTTACGGTATTAAAACCGATGTCTTGT GCTGGAATTTCTAACCTTGTACCATTGTTTTGTTTTCCTTTTTGTGCTTACATATACTCC CTCCGATCCTAAATATAAGTCTTTTTAGAGATTTCACTAAAGGATTACATATGATGCAAA ATGAGTGAATCTACACTTTAAATTATGTCTACATACATCCGTATGTAGTTTTCTAGTGGA ACCTTTAAAAAGACATGTATTTAGAAACGGAGGGAGTAGTTTTGCATTATGTGGAATTCG ATAGATAATGGAAAGAACAAAGTTATTTACCG
Protein Sequence (241 aa)
>BART1_0-u52907.011 241 150831_barley_pseudomolecules PAPMAPYFVRPYPHPETTTSSSASIVFPTTNARFTGTVPPPNRMAAALASSRCCRRPSLL NSDRRRRSVVRCALSGEKGNSFSWNKCAISIALSVGLITCPPTFGWSAHAFPLEPVIPDI SVLISGPPIKDPGALLRYALPIDNKAIREVQKPLEDITDSLKVSGVRALDSVERNVRQAS RALTNGRSLILTGLAESKRENGEKILDKLAVGLEELQRIIEDRNRNAVAPKQKELLNYVG I