- Transcript HORVU7Hr1G062930.5
- Transcript IDHORVU7Hr1G062930.5
- Gene IDHORVU7Hr1G062930
Barley RTD
Exon Structure of HORVU7Hr1G062930.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 305302829 | 305302590 | - |
| chr7H | 2 | 305303888 | 305303814 | - |
| chr7H | 3 | 305304132 | 305303990 | - |
| chr7H | 4 | 305304585 | 305304317 | - |
| chr7H | 5 | 305305059 | 305304860 | - |
| chr7H | 6 | 305305504 | 305305214 | - |
| chr7H | 7 | 305306720 | 305306483 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g29370.1 | +2 | 0.0 | 717 | 354/416 (85%) | protein|peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed |
| TAIR PP10 | AT3G01480 @ ARAPORT AT3G01480.1 @ TAIR |
+2 | 0.0 | 621 | 307/416 (74%) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437 |
| BRACH PP3 | Bradi3g34940.1.p | +2 | 0.0 | 756 | 374/416 (90%) | pacid=32818759 transcript=Bradi3g34940.1 locus=Bradi3g34940 ID=Bradi3g34940.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1456 bp)
>HORVU7Hr1G062930.5 1456 150831_barley_pseudomolecules CCCGCCCCCCGCTCCTATGGCTCCATATTTTGTCCGGCCTTATCCACATCCCGAAACCAC CACCAGCTCCTCCGCTTCCATCGTTTTTCCTACCACCAACGCCCGCTTCACCGGAACCGT ACCCCCACCCAACCGCATGGCCGCGGCGCTCGCCTCCTCCCGCTGCTGCCGCCGCCCTTC GCTTCTTAACAGTGATCGTCGCCGCCGCTCCGTCGTCCGGTGCGCGCTCTCCGGCGAGAA AGGAAACTCATTTAGCTGGAACAAATGTGCAATTTCTATAGCATTGTCTGTTGGATTAAT TACTTGCCCACCAACATTTGGATGGTCGGCCCATGCTTTTCCGCTCGAACCTGTAATCCC TGATATTTCAGTTCTGATTTCTGGACCTCCCATTAAAGATCCAGGGGCTTTGTTGAGATA TGCTTTGCCCATAGATAATAAAGCTATTCGTGAAGTTCAAAAACCGTTAGAGGATATCAC CGATAGTCTCAAAGTTTCTGGTGTTAGAGCGTTGGATTCAGTTGAAAGAAATGTGAGGCA GGCCTCGAGAGCGCTGACTAATGGGAGGAGTTTAATACTTACTGGTCTTGCTGAATCAAA AAGAGAAAATGGAGAAAAAATATTGGATAAATTAGCTGTTGGACTTGAAGAGCTTCAACG AATTATTGAGGATAGAAACAGGAATGCGGTAGCTCCAAAGCAGAAAGAGCTTCTCAATTA TGTTGGAATCTGAGATCTTCCTGGGACATTGCATTTCTGCAGTGTAGAAGAAGATATGGT CGATGGCTTCCCCTATGAAGTACCAGAAGAATACAACAATATGCCTCTTCTTAAAGGAAG AGCTACTGTGGATATGACGGTTAAGATTAAAGATAATCCAAACGTAGAAGATTGTGTATT TCGGATAGTTCTGGATGGATATAATGCTCCTGTGACTTCTGGGAACTTCGTAGATCTGGT GGAACGGAAGTTCTATGATGGCATGGAAATCCAAAGAGCTGATGGTTTTGTTGTTCAGAC GGGAGATCCTGAGGGGCCAGCCGACGGTTTTATTGATCCCAGTACTGGCAAGAGTCGTAC CATACCTCTTGAGATAATGGTTGATGGTGACAAGGCGCCTATATACGGTGAAACACTTGA GGAACTTGGCCTTTACAAGGCTCAAACAAAGCTTCCTTTTAATGCATTTGGAACGATGGC AATGGCTAGAGAAGTAGAATTTGATGACAACTCCGCTTCTAGTCAAGTCTTCTGGCTCTT GAAAGAAAGTGAGTTGACGCCAAGTAATTCCAATATATTGGATGGGCGGTATTCGGTGTT TGGATACGTAACCGAGAATGAGGATTTCTTGGCTGATCTCAAGGTGGGGGACGTTATTGA ATCAATCCAGGTTGTCTCAGGCCTAGACAATCTTGTCAACCCGAGCTACAAGATTGTAGG GTAGCATGTTTCCGTA