Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u05042	83.8	-	-	2997	-522	Partial-Overlap

Transcripts from Gene HORVU1Hr1G073170

Transcript	Length(bp)	Description
HORVU1Hr1G073170.1	1467	gene=HORVU1Hr1G073170 CDS=808-1248
HORVU1Hr1G073170.2	1366	gene=HORVU1Hr1G073170 CDS=707-1147
HORVU1Hr1G073170.3	1067	gene=HORVU1Hr1G073170 CDS=1-852
HORVU1Hr1G073170.4	1674	gene=HORVU1Hr1G073170 CDS=444-746
HORVU1Hr1G073170.5	1523	gene=HORVU1Hr1G073170 CDS=987-1316
HORVU1Hr1G073170.6	1710	gene=HORVU1Hr1G073170 CDS=2-784
HORVU1Hr1G073170.7	1378	gene=HORVU1Hr1G073170 CDS=3-458
HORVU1Hr1G073170.8	2101	gene=HORVU1Hr1G073170 CDS=996-1187
HORVU1Hr1G073170.9	608	gene=HORVU1Hr1G073170 CDS=177-608

Exon Structure of HORVU1Hr1G073170

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-
BRACH PP3	None	-	-	-	-	-

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons