Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU1Hr1G073170	83.8	-	-	2997	-522	Partial-Overlap

Transcripts from Gene BART1_0-u05042

Transcript	Length(bp)	Description
BART1_0-u05042.001	1888	1888 bp MSTRG.5042.1 MSTRG.5042
BART1_0-u05042.002	2063	2063 bp MSTRG.5042.2 MSTRG.5042
BART1_0-u05042.003	2460	2460 bp MSTRG.5042.3 MSTRG.5042
BART1_0-u05042.004	2370	2370 bp MSTRG.5042.4 MSTRG.5042
BART1_0-u05042.005	1989	1989 bp MSTRG.5042.5 MSTRG.5042
BART1_0-u05042.006	1759	1759 bp MSTRG.5042.6 MSTRG.5042
BART1_0-u05042.007	1681	1681 bp MSTRG.5042.7 MSTRG.5042
BART1_0-u05042.008	2135	2135 bp MSTRG.5042.8 MSTRG.5042
BART1_0-u05042.009	1535	1535 bp MSTRG.5042.9 MSTRG.5042
BART1_0-u05042.010	1767	1767 bp MSTRG.5042.10 MSTRG.5042
BART1_0-u05042.011	1454	1454 bp MSTRG.5042.11 MSTRG.5042
BART1_0-u05042.012	1341	1341 bp MSTRG.5042.12 MSTRG.5042
BART1_0-u05042.013	1082	1082 bp MSTRG.5042.13 MSTRG.5042
BART1_0-u05042.014	1618	1618 bp MSTRG.5042.14 MSTRG.5042

Exon Structure of BART1_0-u05042

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-
BRACH PP3	None	-	-	-	-	-

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0034051	negative regulation of plant-type hypersensitive response
GO:0045595	regulation of cell differentiation

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons