- Transcript HORVU1Hr1G073170.9
- Transcript IDHORVU1Hr1G073170.9
- Gene IDHORVU1Hr1G073170
Exon Structure of HORVU1Hr1G073170.9
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr1H | 1 | 501617123 | 501617088 | - |
chr1H | 2 | 501617385 | 501617276 | - |
chr1H | 3 | 501618080 | 501617967 | - |
chr1H | 4 | 501618560 | 501618447 | - |
chr1H | 5 | 501619197 | 501618964 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g06280.7 | +3 | 1e-64 | 197 | 117/123 (95%) | protein|LSD1 zinc finger domain containing protein, expressed |
TAIR PP10 | AT1G32540 @ ARAPORT AT1G32540.3 @ TAIR |
+3 | 1e-57 | 179 | 105/122 (86%) | Symbols: LOL1 | lsd one like 1 | chr1:11768043-11769591 FORWARD LENGTH=154 |
BRACH PP3 | Bradi3g16400.3.p | +3 | 6e-65 | 197 | 118/123 (96%) | pacid=32812785 transcript=Bradi3g16400.3 locus=Bradi3g16400 ID=Bradi3g16400.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (608 bp)
>HORVU1Hr1G073170.9 608 150831_barley_pseudomolecules ATACTACACCTTTTCCCCGGTAGAATCGCGGTGTTCTCACCGGAATCTCCCACAATTTAT GCAGGATTTCATGTAGAGGAGGGCAATCTGTTCTCATCCCCTCGACTTCCAGCAGAGCGT GCGAAGTCTCGTCCGCAGCAACGACGACGCCGGCTCAGGCAGCCGCGGGCACGGCAATGC CGGTTCCTCTTGCCCCTTACCCAACTCCTCCTGCGCCCTTCACGCCACCCGCTCGGGCTC AAAGCCAACTTGTCTGCTCTGGGTGCCGGAATCTGCTCATGTATCCTGCCGGCGCAACGT CGGTATGCTGCGCGGTTTGCAGTACCGTGACCGCTGTTCCGGCTCCTGGGACCGAGATGG CGCAGCTAGTTTGCGGAGGATGCCACACTCTTCTGATGTACATACGTGGTGCCACAAGTG TACAGTGTTCTTGCTGCCACACTGTCAACCTGGCAATGGAAGCGAATCAGGTTGCGCATG TAAACTGTGGGAGTTGCCGAATGCTGCTCATGTACCAGTACGGCGCAAGGTCCGTCAAAT GTGCAGTCTGCAGTTTCGTGACATCAGTTGGGGCATCATCGGGTGCAGAGCAGAAGCCCA GCAACTGA