- Transcript HORVU1Hr1G073170.5
- Transcript IDHORVU1Hr1G073170.5
- Gene IDHORVU1Hr1G073170
Barley RTD
Exon Structure of HORVU1Hr1G073170.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 501617123 | 501616881 | - |
| chr1H | 2 | 501617385 | 501617276 | - |
| chr1H | 3 | 501618080 | 501617967 | - |
| chr1H | 4 | 501619133 | 501618447 | - |
| chr1H | 5 | 501619597 | 501619229 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06280.7 | +3 | 7e-62 | 200 | 119/126 (94%) | protein|LSD1 zinc finger domain containing protein, expressed |
| TAIR PP10 | AT1G32540 @ ARAPORT AT1G32540.1 @ TAIR |
+3 | 1e-53 | 179 | 105/125 (84%) | Symbols: LOL1 | lsd one like 1 | chr1:11768253-11769591 FORWARD LENGTH=187 |
| BRACH PP3 | Bradi3g16400.3.p | +3 | 4e-62 | 200 | 120/126 (95%) | pacid=32812785 transcript=Bradi3g16400.3 locus=Bradi3g16400 ID=Bradi3g16400.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1523 bp)
>HORVU1Hr1G073170.5 1523 150831_barley_pseudomolecules ACAGTGCCGTGCTTTACCTTATCTGCCGCATTCCAACTCATGTTGTTATTCTGAGCAAAA CTCGACTCGCTCGCTCGTCTCGACATCTGCACCGGATCGAGCTCAGCAAAGCCCGAGCCG GAGGCGCTCGTCTGCCCGGGGAGCGGCGCCATGCGGGTCCGCCTCTTCCTCTGAACCGGG CAAGCGCGAGCCGCCTTCTTCCTCCGGCTCGGCGTCGGCGGCGACGACGAGCGTCGGTGG CGGCATAGCACGGTCCAGCGACGAGCAGGTGATTCGGCGCCCAGCTCTGCTGCCGCGACG AGCGCTGAAGGCGGCTCTCCGTCTGTCTAATTTGACGCTCGATTTGCCTCAGGCCTGCAC GGCTCAACTGATTTCATGTAGAGGAGGGCAATCTGTTCTCATCCCCTCGACTTCCAGCAG AGCGTGCGAAGTCTCGTCCGCAGCAACGACGACGCCGGCTCAGGCAGCCGCGGGCACGGC AATGCCGGTTCCTCTTGCCCCTTACCCAACTCCTCCTGCGCCCTTCACGCCACCCGCTCC CAATGCAGGTATGGTCGCCGACTGGGGGTACCGCAAGAACGGAGAAATCTTTGGCAATCA TTCGATGCTCCCCCTTTTTCTGTTTTTTTTTATATAAATTTATTTCATGTTTCTTAGCCA CCCAGAAAACCAAGATGTTAACGTTCTGGCTTCTTCATGATTTTTTTTTTCTTACGAAAA GTCTATCGGAACTGAATTTTCATGCTGCAGCTCCTTCTGCTGTTTTTAGTCTCCGAAGTT GTGATAGAACAGATTAAGCCCAAGATATCGATTAAGCCGTACATGTTTCTCTGCTGATTT TGCCCTTGCAATGCTTTTCTCAAATGTGACTTTTGGTTATTGGTAGGTGAGCTTCAGCCA CTGAAATTTCATAACTAAGGTTCCATGCTTGAGCAATTTCAGGGGCTCAAAGCCAACTTG TCTGCTCTGGGTGCCGGAATCTGCTCATGTATCCTGCCGGCGCAACGTCGGTATGCTGCG CGGTTTGCAGTACCGTGACCGCTGTTCCGGCTCCTGGGACCGAGATGGCGCAGCTAGTTT GCGGAGGATGCCACACTCTTCTGATGTACATACGTGGTGCCACAAGTGTACAGTGTTCTT GCTGCCACACTGTCAACCTGGCAATGGAAGCGAATCAGGTTGCGCATGTAAACTGTGGGA GTTGCCGAATGCTGCTCATGTACCAGTACGGCGCAAGGTCCGTCAAATGTGCAGTCTGCA GTTTCGTGACATCAGTTGGGGCATCATCGGGTGCAGAGCAGAAGCCCAGCAACTGAAATC CTGCAAGTTCATTACGAAGGCAGCTTCCCGAAATAAGAATGCTTTGAGTGCACATGTATA GAGTTCTTCCCAGAAGCAACCTTTTCCTCCCCTCTCCATTTCTCCCTTCGTTGGACCTGG CGAGCTTGCGGAATAAACAAGAGTTTTTGGTAATACATAGTTGCTCAAAATTCGTCGAAT CATCTGTGTAACTGGGTCAGACA