- Transcript HORVU1Hr1G073170.1
- Transcript IDHORVU1Hr1G073170.1
- Gene IDHORVU1Hr1G073170
Barley RTD
Exon Structure of HORVU1Hr1G073170.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 501617123 | 501616869 | - |
| chr1H | 2 | 501617385 | 501617276 | - |
| chr1H | 3 | 501618080 | 501617967 | - |
| chr1H | 4 | 501618560 | 501618447 | - |
| chr1H | 5 | 501619133 | 501618955 | - |
| chr1H | 6 | 501619923 | 501619229 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06280.7 | +1 | 1e-60 | 196 | 117/123 (95%) | protein|LSD1 zinc finger domain containing protein, expressed |
| TAIR PP10 | AT1G32540 @ ARAPORT AT1G32540.1 @ TAIR |
+1 | 2e-54 | 181 | 105/122 (86%) | Symbols: LOL1 | lsd one like 1 | chr1:11768253-11769591 FORWARD LENGTH=187 |
| BRACH PP3 | Bradi3g16400.3.p | +1 | 3e-61 | 197 | 118/123 (96%) | pacid=32812785 transcript=Bradi3g16400.3 locus=Bradi3g16400 ID=Bradi3g16400.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1467 bp)
>HORVU1Hr1G073170.1 1467 150831_barley_pseudomolecules AAAAAACATAGAAATATCGTAGAGGTTCGCATGAAAAACAGAAGGGGTGAAAAAACACAT AAATTTTCACAGCGAACCGTTTGTAACTCGGGAAATGACAAGAATTCTTATTAGAGTAGC TAACATGATGATGTACATGCTAATCCTAGTGTTTTTTTTCGCTTCTTTTCATTCCAAAAC CACATGTTGCTGCACAGGATTGTTGACGGAGATTTCTATAAACGAAAACGAAAGCAAAAA AAATTACACAGAACAGGATAGCGTAGTGAGTTTCGACGGGGCCCACATGGCATAGGGGAT AAGAAAGAGAATCCACGTTCCCAGCCACAGTGCCGTGCTTTACCTTATCTGCCGCATTCC AACTCATGTTGTTATTCTGAGCAAAACTCGACTCGCTCGCTCGTCTCGACATCTGCACCG GATCGAGCTCAGCAAAGCCCGAGCCGGAGGCGCTCGTCTGCCCGGGGAGCGGCGCCATGC GGGTCCGCCTCTTCCTCTGAACCGGGCAAGCGCGAGCCGCCTTCTTCCTCCGGCTCGGCG TCGGCGGCGACGACGAGCGTCGGTGGCGGCATAGCACGGTCCAGCGACGAGCAGGTGATT CGGCGCCCAGCTCTGCTGCCGCGACGAGCGCTGAAGGCGGCTCTCCGTCTGTCTAATTTG ACGCTCGATTTGCCTCAGGCCTGCACGGCTCAACTGATTTCATGTAGAGGAGGGCAATCT GTTCTCATCCCCTCGACTTCCAGCAGAGCGTGCGAAGTCTCGTCCGCAGCAACGACGACG CCGGCTCAGGCAGCCGCGGGCACGGCAATGCCGGTTCCTCTTGCCCCTTACCCAACTCCT CCTGCGCCCTTCACGCCACCCGCTCCCAATGCAGGGGCTCAAAGCCAACTTGTCTGCTCT GGGTGCCGGAATCTGCTCATGTATCCTGCCGGCGCAACGTCGGTATGCTGCGCGGTTTGC AGTACCGTGACCGCTGTTCCGGCTCCTGGGACCGAGATGGCGCAGCTAGTTTGCGGAGGA TGCCACACTCTTCTGATGTACATACGTGGTGCCACAAGTGTACAGTGTTCTTGCTGCCAC ACTGTCAACCTGGCAATGGAAGCGAATCAGGTTGCGCATGTAAACTGTGGGAGTTGCCGA ATGCTGCTCATGTACCAGTACGGCGCAAGGTCCGTCAAATGTGCAGTCTGCAGTTTCGTG ACATCAGTTGGGGCATCATCGGGTGCAGAGCAGAAGCCCAGCAACTGAAATCCTGCAAGT TCATTACGAAGGCAGCTTCCCGAAATAAGAATGCTTTGAGTGCACATGTATAGAGTTCTT CCCAGAAGCAACCTTTTCCTCCCCTCTCCATTTCTCCCTTCGTTGGACCTGGCGAGCTTG CGGAATAAACAAGAGTTTTTGGTAATACATAGTTGCTCAAAATTCGTCGAATCATCTGTG TAACTGGGTCAGACAGATACATGAACC