barSeed - Barley Seed Development Database

Probe CUST_9768_PI390587928

Source Contig U35_351

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9768_PI390587928	Hv_44K_v2	GGTGGAAGATTCCTGTATTTGACATTAAGACCCACTGATTGACAATTGCAATTTTCAGTT	880	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358991	2554	2e-24	856 - 915	100	60 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC29836 ABC35392 ABC36259 ABC45389 ABC45928
MLOC	MLOC_53661.1	335	2e-24	223 - 282	100	60 / 60	plus	ABC00308 ABC00589 ABC00842 ABC00997 ABC01004 ABC26838 ABC45928
JLOC1	JLOC1_34489.1	405	8e-25	223 - 282	100	60 / 60	plus
Harvest21	ABC00842	959	3e-25	876 - 935	100	60 / 60	plus	ABC00842
Harvest21	ABC01004	1030	1e-23	24 - 83	98	59 / 60	minus	ABC01004
Harvest21	ABC00997	956	6e-22	25 - 84	97	58 / 60	minus	ABC00997
Harvest35	U35_351	963	3e-25	881 - 940	100	60 / 60	plus

Contig Sequence (963 bp)

>U35_351 963 Hv_44K_v2
GTCCCCCGGGCTGCAGGAATTCGCAAGTGTAGCCGGCATCCTCCTCTCTACAGTTAATAC
AGTACCATGGCCCCCGCCGTGATGGCTTCGTCGGCTACCACCGTCGCACCCTTCCAGGGG
CTCAAGTCCACAGCCGGTCTCCCCGTCAGCCGCCGCTCCAGCGCCAGCCTCGGCAGCGTC
AGCAATGGCGGAAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGTATCAAGAAGTTC
GAGACCCTGTCTTACTTGCCACCCCTCACCACGGAGGCCCTCCTGAAGCAGGTTGACTAC
CTGATCCGCTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCAAGGTTGGCTTCGTCTTCCGT
GAGCACAACAGCTCCCCCGGGTACTACGACGGCCGATACTGGACAATGTGGAAGCTGCCT
ATGTTCGGATGCACCGACGCCACACAGGTGCTTAACGAGGTGGAGGAGGTCAAGAAGGAG
TACCCTGACGCTTACGTCCGTATCATCGGCTTCGACAACCTGCGGCAGGTGCAGTGCGTC
AGCTTCATCGCCTTCAGGCCACCGGGTTGCGAGGAGTCCGGCAAGGCATAAACTACGAGG
TGAAACAATGGCCTATGTCGTATGAAGGTCTTCTGTGAACTTCACTTTTGTCCATGACTC
TGCTTTCCGACTAGAGCATAATTTTCTTCTCTATGATCTGTGTATGTACGAGCATAGGTT
GTGGAGCATATATGCATATGTAAATTCTAGCACGGCCTACACATATACAACACCTGTGCC
ATATTTATAATATACAACAAGCGGACCATTGTCTTGCTGTTAATAAAAAAAAAAAAAAAA
AAAAAAATTTAGCACTGCAATGGATGTCTCGCAGCTAGTGGGTGGAAGATTCCTGTATTT
GACATTAAGACCCACTGATTGACAATTGCAATTTTCAGTTTCTTTACTTATATCAATAAC
AAA

Homology of Contig U35_351 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g17600.1	176	5e-95	protein\|ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g08800.1	175	2e-104
Arabidopsis v10	AT1G67090.1	180	2e-71	\| Symbols: RBCS1A \| ribulose bisphosphate carboxylase small chain 1A \| chr1:25048465-25049249 REVERSE LENGTH=180