barSeed - Barley Seed Development Database

Probe CUST_7871_PI390587928

Source Contig U35_462

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7871_PI390587928	Hv_44K_v2	TTCTGAGATTGACAAAGTCAGACTTCTGCGAGCCCGTGAACATTGGAAGTGATGAAATGG	914	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361091	1571	2e-24	915 - 974	100	60 / 60	plus	ABC01926 ABC01929 ABC01931
MLOC	MLOC_44090.2	1633	2e-24	995 - 1054	100	60 / 60	plus	ABC01926 ABC01929 ABC01931
MLOC	MLOC_44090.1	1749	2e-24	1134 - 1193	100	60 / 60	plus	ABC01926 ABC01929 ABC01931
MLOC	AK252634.1	2122	7e-23	1506 - 1565	98	59 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC01926 ABC01929 ABC01931 ABC35392 ABC36259 ABC45928
JLOC1	JLOC1_28540.1	1806	8e-25	1052 - 1111	100	60 / 60	plus
Harvest21	ABC01926	1529	3e-25	900 - 959	100	60 / 60	plus	ABC01926
Harvest21	ABC01932	1217	5e-23	940 - 998	98	58 / 59	plus
Harvest35	U35_462	1544	3e-25	915 - 974	100	60 / 60	plus

Contig Sequence (1544 bp)

>U35_462 1544 Hv_44K_v2
ATCAATCCATCCAGGGCCGCACACCGCCGCCTCCTATCCCGCCACCCCGACGAGAAAAAG
GGAGACCACGCCGCCATCGCCATCGCCAGTCGCCACCTCCCCCGCCTCGTTACCGCCGCC
GGCACCCCCTCCCCCCGCAAGCGCAAGAATGGGGAGCACCGACGAGACTGGAACTCCCTA
TGGCGAGTACACCTATGCTGAGCTGGAGAGGGAGTTGTACTGGCCATCCGAGAAGCTGAG
AATCTCGGTTACTGGAGCTGGTGGTTTCATTGGATCCCATATTGCTCGCCGCCTGAAGAG
TGAGGGGCACTACATCATTGCCTCTGACTGGAAGAAGAACGAGCATATGACCGAGGACAT
GTTCTGCCATGAGTTCCACCTTGCTGACCTCAGGGTCATGGACAACTGCCTTAAGGTCAC
CACCAACGTCGACCATGTCTTCAATCTTGCTGCTGATATGGGAGGCATGGGGTTCATTCA
GTCCAACCACTCTGTTATCATGTACAATAACACCATGATCAGTTTCAACATGCTTGAGGC
CGGGCGTATCAACGGTGTGAAGAGGTTCTTCTATGCCTCGAGCGCATGCATCTACCCTGA
ATTCAAACAGCTTGAGACAAATGTGAGCTTGAAGGAAGCTGATGCCTGGCCTGCTGAGCC
ACAAGATGCCTATGGCTTGGAGAAGCTCGCGACCGAGGAGCTGTGCAAGCACTACACCAA
GGACTTTGACATTGAGTGCCGTATTGGCCGTTTTCACAACATTTATGGTCCCTTTGGAAC
ATGGAAAGGCGGTCGCGAGAAGGCACCAGCTGCCTTCTGTAGAAAGGCTCAGACCTCCAC
CGAACGGTTTGAGATGTGGGGTGATGGTCTACAGACTCGATCGTTCACTTTTATCGACGA
GTGCGTCGAGGGTGTTCTGAGATTGACAAAGTCAGACTTCTGCGAGCCCGTGAACATTGG
AAGTGATGAAATGGTGAGCATGAACGAGATGGCTGAGATTGTTCTCGGCTTCGAGGACAA
GAAGCTACCCATCCACCACATCCCTGGTCCAGAGGGTGTCCGCGGCCGCAACTCTGACAA
CACCCTCATCAAGGAGAAGCTTGGCTGGGCCCCCACAATGAAGCTCAAGGATGGCCTAAG
GTTCACCTACTTCTGGATCAAGGAGCAGATCGAGAAGGAGAGGACCGAGGGGAAGGACGT
CGCCCGGTACGGATCATCCAAGGTGGTGTCCACACAGGCACCGGTGCAGCTGGGCTCCCT
CCGCGCGGCTGACGGCAAGGAGTAAACAACTATGCATATCAACCCCAGGCCTATTATGCC
ACTGCCCAATTGCCCACCGATCGGATCCTTCGTTGCGAAAACACTTGAGAATTGCACAGC
CTGCCCTGCCTACCCCATGTGTGATTCAGCAGATTCTAGTGCTCCTGTTCATTGTCACCC
CCATTAATTATTATCATCGTGTCAACAGAATTCCTCGTACATCACACTTTTGATTGGATG
CACAATAAAATTCCCTTTTCTCTTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_462 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g28200.1	379	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi3g26860.2	415
Arabidopsis v10	AT5G28840.1	377	\| Symbols: GME \| GDP-D-mannose 3,5-epimerase \| chr5:10862472-10864024 REVERSE LENGTH=377