barSeed - Barley Seed Development Database

Probe CUST_5460_PI390587928

Source Contig U35_29078

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5460_PI390587928	Hv_44K_v2	ATCTACCCTGAATTCAAACAGCTTGAGACAAATGTGAGCTTGAAGGAAGCTGATGCCTGG	614	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361091	1571	2e-24	590 - 649	100	60 / 60	plus	ABC01926 ABC01929 ABC01931
MLOC	AK252634.1	2122	2e-24	1181 - 1240	100	60 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC01926 ABC01929 ABC01931 ABC35392 ABC36259 ABC45928
MLOC	MLOC_44090.2	1633	2e-24	602 - 661	100	60 / 60	plus	ABC01926 ABC01929 ABC01931
MLOC	MLOC_44090.1	1749	2e-24	809 - 868	100	60 / 60	plus	ABC01926 ABC01929 ABC01931
JLOC1	JLOC1_28540.1	1806	8e-25	727 - 786	100	60 / 60	plus
Harvest21	ABC01932	1217	3e-25	615 - 674	100	60 / 60	plus
Harvest21	ABC01926	1529	3e-25	575 - 634	100	60 / 60	plus	ABC01926
Harvest21	ABC01928	626	1e-23	561 - 620	98	59 / 60	plus
Harvest35	U35_29078	715	3e-25	615 - 674	100	60 / 60	plus
Harvest35	U35_462	1544	3e-25	590 - 649	100	60 / 60	plus

Contig Sequence (715 bp)

>U35_29078 715 Hv_44K_v2
GCATAACCCGATCTAGATCGCGGGAAGCCCATCAATCCATCCAGGGCCGCACACCGCCGC
CTCCTATCCCGCCACCCCGACGAGAAAAAGGGAGACCACGCCGCCATCGCCATCGCCAGT
CGCCACCTCCCCCGCCTCGTTTCCGCCGCCGGCACCCCCCCGCAAGCGCAAGAATGGGGA
GCACCGACGAGACTGGAACTCCCTATGGCGAGTACACCTATACTGAGCTGGAGAGGGAGT
TGTACTGGCCATCCGAGAAGCTGAGAATCTCGGTTACTGGAGCTGGTGGTTTCATTGGAT
CCCATATTGCTCGCCGCCTGAAGAGTGAGGGGCACTACATCATTGCCTCTGACTGGAAGA
AGAACGAGCATATGACCGAGGACATGTTCTGCCATGAGTTCCACCTTGCTGACCTCAGGG
TCATGGACAACTGCCTTAAGGTCACCACCAACGTCGACCATGTCTTCAATCTTGCTGCTG
ATATGGGAGGCATGGGGTTCATTCAGTCCAACCACTCTGTTATCATGTACAATAACACCA
TGATCAGTTTCAACATGCTTGAGGCCGGGCGTATCAACGGTGTGAAGAGGTTCTTCTATG
CCTCGAGCGCATGCATCTACCCTGAATTCAAACAGCTTGAGACAAATGTGAGCTTGAAGG
AAGCTGATGCCTGGCCTGCTGAGCCACAAGATGCCTATGGCTTGGAGAAGCTCGC

Homology of Contig U35_29078 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g28200.2	360	3e-106	protein\|NAD dependent epimerase/dehydratase family protein, putative, expressed
Brachypodium v1_2	Bradi3g26860.5	335	1e-107
Arabidopsis v10	AT5G28840.1	377	4e-99	\| Symbols: GME \| GDP-D-mannose 3,5-epimerase \| chr5:10862472-10864024 REVERSE LENGTH=377