barSeed - Barley Seed Development Database

Probe CUST_39524_PI390587928

Source Contig U35_13910

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39524_PI390587928	Hv_44K_v2	CTGTTCGCCTAGCGGCGTCGATGTAGTATTTGCTGTTAATGGAAAAATCGTTAGAAAAAA	587	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68568.2	976	7e-23	600 - 656	100	57 / 57	plus	ABC00016 ABC00028 ABC00054 ABC00076 ABC00096 ABC00118 ABC00188 ABC00350 ABC00412 ABC00414 ABC00427 ABC00494 ABC00648 ABC00709 ABC00869
JLOC1	JLOC1_45376.1	733	4e-23	600 - 656	100	57 / 57	plus
Harvest35	U35_13910	658	3e-25	588 - 647	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_13910 658 Hv_44K_v2
GCTCGCAATCCCAATCCCAATCCCAATCTCCCAGTCCCAAACCTCTTCTCTCCGGCGACC
CGACGAGCGTCAGCGGCTAGCCATGGACGTCTCGGCCACCGGAGCAGGCGCGAAGGCGAA
GAAGGGAGCCGCAGGGCGCAAGGCCGGCGGCCCGAGGAAGAAGTCTGTGTCGAGGTCCGT
CAAGGCCGGCCTCCAGTTCCCCGTGGGCCGCATCGGGCGGTACCTCAAGAAGGGCCGCTA
CGCGCAGCGCGTCGGCACGGGCGCCCCCGTGTACCTCGCGGCCGTCCTCGAGTACCTTGC
CGCCGAGCTGTTGGAGCTCGCCGGCAACGCCGCCAAGGACAACAAGAAGAGCCGCATCAT
CCCGAGGCACCTGCTGCTCGCAGTCAGGAACGACGAGGAGCTCGGGAAGCTGCTGGCCGG
CGTCACCATCGCGCACGGCGGCGTCGTGCCCAAGATCAACCCGGTGCTGCTCCCCAAGCG
GACGGCGGAGAAGGCGCCCAAGGAGGGCAAGTCGCCCAAGAAGGCCGCCAAGTCCCCCAA
GAAGGCTTAGGGAGGCGCGCCGATTTGTGTTAGTATGTTGTAATAAGCTGTTCGCCTAGC
GGCGTCGATGTAGTATTTGCTGTTAATGGAAAAATCGTTAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_13910 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None