barSeed - Barley Seed Development Database

Probe CUST_39473_PI390587928

Source Contig U35_13945

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39473_PI390587928	Hv_44K_v2	GGTATTTACTACACAGGAATGGTGAAAGATGCAATCATATCAGTCCTTTGTGTTCTACCT	628	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18716.1	368	2e-24	92 - 151	100	60 / 60	minus	ABC00158 ABC00671
MLOC	AK251633.1	761	7e-23	653 - 712	98	59 / 60	plus	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC34584
MLOC	AK366376	1562	3e-21	650 - 706	98	56 / 57	plus	ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC34584
JLOC1	JLOC1_12956.1	378	8e-25	102 - 161	100	60 / 60	minus
Harvest21	ABC00578	688	3e-25	629 - 688	100	60 / 60	plus
Harvest35	U35_13945	688	3e-25	629 - 688	100	60 / 60	plus

Contig Sequence (688 bp)

>U35_13945 688 Hv_44K_v2
TCCAGAACCACCGCCGCCTACACCACACCTCGTCGCCGGAGAAGCAGCAAGCAAGAAGAT
GGCCGGAAGGAAGGGTGGCGACAGGAAGAAGGCGGTGACCAGGTCCGTGAAGGCCGGGCT
CCAGTTCCCCGTCGGCCGCATCGGGCGCTACCTCAAGAAGGGCCGCTACGCCCAGCGCGT
CGGCTCCGGAGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCAGCCGAGCTCCT
GGAGCTTGCCGGCAACGCGGCCAAGGACAACAAGAAGACCCGCATCATCCCGCGCCACCT
GCTGCTCGCCGATCGCAACGACCAGGAGCTCGGCCGGCTGCTCGCCGGCGTCACCATCGC
CCACGGCGGCGTGATCCCCAACATCAACTCCGTGCTGCTCCCGAAGAAGTCCCCCGCCGC
CGCCGAGAAGGAGGCCAAGTCGCCCAAGAAGAAGGCCGCCACCAAGTCCCCCAAGAAGAA
GGCCCCCGCCACCAAGGAGTAACTGCTCCCATAGCCTAACCAGTGTTGCTTAGATCCATT
TCTCATGGACTAAGATGAGATCCTGTATGTAATGCCTGGTAGTCTGTAGTGCCTGTTAGA
TTCGTCGAGCAATGGTGACATTGTATCTGGTATTTACTACACAGGAATGGTGAAAGATGC
AATCATATCAGTCCTTTGTGTTCTACCT

Homology of Contig U35_13945 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None