barSeed - Barley Seed Development Database

Probe CUST_39469_PI390587928

Source Contig U35_13949

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39469_PI390587928	Hv_44K_v2	TTGTTACTTGCTGTGATTTCTGAATGCTAATCTGCGTGATACCGTGGTTCTTGCAAAAAA	590	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_35155.1	682	3e-22	615 - 670	100	56 / 56	plus	ABC00016 ABC00054 ABC00076 ABC00085 ABC00096 ABC00119 ABC00137 ABC00145 ABC00154 ABC00167 ABC00188 ABC00321 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00671 ABC00709 ABC00869 ABC44597
JLOC1	JLOC1_22711.1	777	1e-22	626 - 681	100	56 / 56	plus
Harvest35	U35_13949	661	3e-25	591 - 650	100	60 / 60	plus
Harvest35	U35_13957	687	5e-23	611 - 666	100	56 / 56	plus

Contig Sequence (661 bp)

>U35_13949 661 Hv_44K_v2
ATCGATCCCGGCCATCTCTCTGTTCCGGCGACAACCGCACCATCCCGCTCACCCTCCACC
GCGAATCAGAAGATGGCCATCGCCGGCAGCGGGAGGGGCAAGGCGAAGCCCGCCGCCAGC
GCCAAGTCCGTGTCCCGGTCGTCCAAGGCCGGCCTGCAGTTCCCCGTCGGCCGCGTCGCC
AGGTACCTCAAGGTCGGCAAGTACGCGGAGCGCGTCGGCGCCGGAGCCCCCGTCTACCTC
GCCGCCGTCCTCGAGTACCTCGCCGCCGAGACCCTGGAGCTCGCCGGCAACGCGGCGCGG
GACAACAAGAAGAACCGGATCGTGCCGCGCCACATCCAGCTGGCCGTGCGCAACGACGAG
GAGCTGAGCCGGCTGCTGGGCTCCGTCACCATCGCCGCCGGCGGGGTGCTGCCCAGCATC
CACACCACGCTCCTCCCCAAGAAGGCCGGCAAGGCCAAGGGCGACATCGGCTCTGCCTCC
CAGGAGTTCTAGATTAGATTAGTGTTCTTGTTAATGTTTTGGTTTGCTGTGTAATCGATG
TTGGTGGTGGATCTGGTTGGAATGGATTGCATCTTGCAATCTTGTTCTCGTTGTTACTTG
CTGTGATTTCTGAATGCTAATCTGCGTGATACCGTGGTTCTTGCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_13949 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g34510.1	139	4e-51	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None