- Probe CUST_3803_PI390587928
- Source Contig U35_14353
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3803_PI390587928 | Hv_44K_v2 | CCACTTTCTCATGCAAAGGCATGGAGAATTATTATCGATCCTACTAATACTTGTATACAT | 357 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.974 | 0.862 | 0.720 | 0.588 | 1.345 | 1.198 |
| Raw | 2.629 | 3.801 | 2.368 | 3.093 | 2.976 | 2.760 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55663.1 | 1360 | 2e-24 | 1268 - 1327 | 100 | 60 / 60 | plus | ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC02123 ABC45487 ABC50221 |
| JLOC1 | JLOC1_35939.1 | 1371 | 8e-25 | 1241 - 1300 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC45487 | 554 | 3e-25 | 41 - 100 | 100 | 60 / 60 | minus | ABC45487 |
| Harvest35 | U35_14353 | 467 | 3e-25 | 358 - 417 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14344 | 1369 | 1e-23 | 1249 - 1305 | 100 | 57 / 57 | plus |
Contig Sequence (467 bp)
>U35_14353 467 Hv_44K_v2 GGCTCCTGCACTCGGACCAGGTGCTGTTCAACAACGACACCACCGACAACACCGTCCGGA ACTTTGCGTCCAACCCGGCGGCGTTCAGCAGCGCCTTCACGACGGCCATGATCAAGATGG GCAACATCGCTCCCAAGACAGGGACGCAGGGCCAGATCAGGCTCAGCTGCTCCAGGGTGA ACTCGTGATCGACGGACGAGCTGCTATACCTACCAGCCGGCAGCTCGCTAGCACGATACG TGAATGAATAAGGCGAACCAGTGGCCAATATAAACACCAGCACTTGAAAACGTCTATTTT AAGTACGAGCGGCAGCAAATCATGCAGGCATCTACATATATATGTAACATCGAATTCCCA CTTTCTCATGCAAAGGCATGGAGAATTATTATCGATCCTACTAATACTTGTATACATAAT GAAGATATGAACTTCTCTTTTTGACTTGGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_14353 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |