barSeed - Barley Seed Development Database

Probe CUST_3649_PI390587928

Source Contig U35_28101

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3649_PI390587928	Hv_44K_v2	TACTGCATTCGTTGAAGATAGGTGCTCACAATACCTCCTCCTCACCAATATTTTTCGTTC	579	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249454.1	954	3e-22	774 - 832	98	59 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC27839 ABC35392 ABC36259 ABC45928
MLOC	AK358991	2554	3e-22	2425 - 2483	98	59 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC29836 ABC35392 ABC36259 ABC45389 ABC45928
Harvest21	ABC26735	639	3e-25	580 - 639	100	60 / 60	plus
Harvest21	ABC49420	607	5e-23	114 - 172	98	59 / 60	minus
Harvest35	U35_28101	639	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_28101 639 Hv_44K_v2
GGNATGAGGGTATCAAGAAGTTCGAGACCCTGTCTTACTTGCCACCCCTCACCACGGAGG
CCCTCCTGAAGCAGGTTGACTACCTGATCCGCTCCAAGTGGGTGCCCTGCCTCGAGTTCA
GCAAGGTTGGCTTCGTCTTCCGTGAGCACAACAGCTCCCCCGGGTACTACGACGGCCGAT
ACTGGACAATGTGGAAGCTGCCTATGTTCGGATGCACCGACGCCACACAGGTGCTTAACG
AGGTGGAGGAGGTCAAGAAGGAGTACCCTGACGCTTACGTCCGTATCATCGGCTTCGACA
ACCTGCGGCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAGGCCACCGGGTTGCGAGGAGT
CCGGCAAGGCATAAACTACGAGAGATAGAAAAAGGAAAAGATGAGGAGGTTCTTGAGAGG
TTCTTCAAGCCGCAACCCCAAGGAGGATGAAAAGAACCACCCCAAGTACGTAGTCCCTCG
AGTCACAGAAGTTCGAGCGTGCGAGTGGCCAAGTGATGAATTTTTGCGCGCCGTTGGGCT
TCATGAAGACTTTTATTACTTGGTGGAGAATGCAGGTCTTACTGCATTCGTTGAAGATAG
GTGCTCACAATACCTCCTCCTCACCAATATTTTTCGTTC

Homology of Contig U35_28101 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g19470.1	170	7e-74	protein\|ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g08800.1	175	2e-82
Arabidopsis v10	AT1G67090.1	180	7e-61	\| Symbols: RBCS1A \| ribulose bisphosphate carboxylase small chain 1A \| chr1:25048465-25049249 REVERSE LENGTH=180