- Probe CUST_35203_PI390587928
- Source Contig U35_13952
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35203_PI390587928 | Hv_44K_v2 | CAATGGTGACATTGTATCTGGTATTTACTACACAGGAATGGTGAAAGATGCAATCATATC | 632 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_18716.1 | 368 | 2e-24 | 111 - 170 | 100 | 60 / 60 | minus | ABC00158 ABC00671 |
| MLOC | AK366376 | 1562 | 7e-23 | 631 - 690 | 98 | 59 / 60 | plus | ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC34584 |
| MLOC | AK251633.1 | 761 | 7e-23 | 634 - 693 | 98 | 59 / 60 | plus | ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC34584 |
| JLOC1 | JLOC1_12956.1 | 378 | 8e-25 | 121 - 180 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00671 | 726 | 3e-25 | 631 - 690 | 100 | 60 / 60 | plus | ABC00671 |
| Harvest21 | ABC00578 | 688 | 3e-25 | 610 - 669 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13952 | 734 | 3e-25 | 633 - 692 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13945 | 688 | 3e-25 | 610 - 669 | 100 | 60 / 60 | plus |
Contig Sequence (734 bp)
>U35_13952 734 Hv_44K_v2 GAGGCATTCCGATCCAGCACCACCGCCGCCAACACCACACCTTGAAGGACCTCGTCGCCG GAGCAGCAGCAAGCAAGCAAGATGGCCGGAAGGAAGGGTGGCGACAGGAAGAAGGCGGTG ACCAGGTCCGTGAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCGCTACCTCAAG AAGGGCCGCTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTC GAGTACCTCGCCGCAGAGCTCCTGGAGCTTGCCGGCAACGCGGCCAAGGACAACAAGAAG ACCCGCATCATCCCGCGCCACCTGTTGCTCGCCGTCCGCAACGACCAGGAGCTCGGCAGG CTGCTCGCCGGCGTCACCATCGCCCACGGCGGCGTCATCCCCAACATCAACTCCGTGCTG CTCCCGAAGAAGTCCCCCGCCGCTGCCGAGAAGGAGGCCAAGTCGCCCAAGAAGAAGGCC GCCACCAAGTCCCCCAAGAAGAAGGCCCCCGCCACCAAGGAGTAACTGCTCCCATAGCCT AACCAGTGTTGCTTAGATCCATTTCTCATGGACTAAGATGAGATCCTGTATGTAATGCCT GGTAGTCTGTAGTGCCTGTTAGATTCGTCGAGCAATGGTGACATTGTATCTGGTATTTAC TACACAGGAATGGTGAAAGATGCAATCATATCAAAAAAAAAAAAAAAAATGTGTTCTAAA AAAAAAAAAAAAAA
Homology of Contig U35_13952 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |