- Probe CUST_28144_PI390587928
- Source Contig U35_28147
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28144_PI390587928 | Hv_44K_v2 | CACATATACAACACCTGTGCCATATTTATAATATACAACAAGCGGACCATTGTCTTGCTG | 269 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358991 | 2554 | 2e-24 | 738 - 797 | 100 | 60 / 60 | plus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC29836 ABC35392 ABC36259 ABC45389 ABC45928 |
| MLOC | AK252711.1 | 1719 | 2e-24 | 1649 - 1708 | 100 | 60 / 60 | plus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC01192 ABC01198 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928 |
| MLOC | AK250863.1 | 1032 | 2e-24 | 963 - 1022 | 100 | 60 / 60 | plus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC07957 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928 |
| MLOC | MLOC_53661.1 | 335 | 2e-24 | 105 - 164 | 100 | 60 / 60 | plus | ABC00308 ABC00589 ABC00842 ABC00997 ABC01004 ABC26838 ABC45928 |
| MLOC | MLOC_46549.1 | 328 | 3e-21 | 123 - 182 | 97 | 58 / 60 | minus | ABC00308 ABC00589 ABC00842 ABC00997 ABC01004 ABC26838 ABC45928 |
| JLOC1 | JLOC1_34489.1 | 405 | 8e-25 | 105 - 164 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_30134.1 | 855 | 2e-21 | 650 - 709 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC26838 | 352 | 3e-25 | 270 - 329 | 100 | 60 / 60 | plus | ABC26838 |
| Harvest21 | ABC01004 | 1030 | 3e-25 | 142 - 201 | 100 | 60 / 60 | minus | ABC01004 |
| Harvest21 | ABC00842 | 959 | 3e-25 | 759 - 818 | 100 | 60 / 60 | plus | ABC00842 |
| Harvest21 | ABC00589 | 807 | 1e-23 | 728 - 788 | 98 | 60 / 61 | plus | ABC00589 |
| Harvest21 | ABC00308 | 862 | 6e-22 | 54 - 113 | 97 | 58 / 60 | minus | ABC00308 |
| Harvest21 | ABC00997 | 956 | 8e-21 | 143 - 204 | 95 | 59 / 62 | minus | ABC00997 |
| Harvest35 | U35_28147 | 352 | 3e-25 | 270 - 329 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_351 | 963 | 3e-25 | 760 - 819 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_345 | 854 | 8e-21 | 745 - 806 | 95 | 59 / 62 | plus |
Contig Sequence (352 bp)
>U35_28147 352 Hv_44K_v2 CTCCTCTCTACAGTTAATACAGTACCCATGGCCCCCGCCGTGATGGCTTCGTCGGCTACC ACCGTCGCACCCTTCCAGGGCTCAAGTCCGGCAAGGCATAAACTACGAGGTGAAACAATG GCCTATGTCGTATGAAGGTCTTCTGTGAACTTCACTTTTGTCCATGACTCTGCTTTCCGA CTAGAGCATAATTTTCTTCTCTATGATCTGTGTTTGTACGAGCATTGGTTGTGGAGCATA TATGCATATGTAAATTCTAGCACGGCCCACACATATACAACACCTGTGCCATATTTATAA TATACAACAAGCGGACCATTGTCTTGCTGTTNATTAAAAAAAAAAAAAAAAA
Homology of Contig U35_28147 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |