barSeed - Barley Seed Development Database

Probe CUST_19879_PI390587928

Source Contig U35_31474

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19879_PI390587928	Hv_44K_v2	AAACAATGGCCTATGTCGTATGAAGGTCTTCTGTGAACTTCACTTTTGTCCATGACTCTG	428	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252627.1	797	2e-24	556 - 615	100	60 / 60	plus	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC35392 ABC36259 ABC45389 ABC45928
MLOC	AK358991	2554	2e-24	581 - 640	100	60 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC29836 ABC35392 ABC36259 ABC45389 ABC45928
MLOC	AK249868.1	737	2e-24	496 - 555	100	60 / 60	plus	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
MLOC	AK252711.1	1719	2e-24	1492 - 1551	100	60 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC01192 ABC01198 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
MLOC	AK250863.1	1032	2e-24	806 - 865	100	60 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC07957 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
Harvest21	ABC49614	334	3e-25	131 - 190	100	60 / 60	minus
Harvest21	ABC26838	352	3e-25	113 - 172	100	60 / 60	plus	ABC26838
Harvest21	ABC00904	838	3e-25	595 - 654	100	60 / 60	plus
Harvest21	ABC00842	959	3e-25	602 - 661	100	60 / 60	plus	ABC00842
Harvest21	ABC50390	362	1e-23	108 - 167	98	59 / 60	minus
Harvest21	ABC01004	1030	1e-23	299 - 358	98	59 / 60	minus	ABC01004
Harvest21	ABC00589	807	1e-23	571 - 630	98	59 / 60	plus	ABC00589
Harvest35	U35_31474	488	3e-25	429 - 488	100	60 / 60	plus
Harvest35	U35_28147	352	3e-25	113 - 172	100	60 / 60	plus
Harvest35	U35_354	757	3e-25	508 - 567	100	60 / 60	plus
Harvest35	U35_351	963	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (488 bp)

>U35_31474 488 Hv_44K_v2
AAGTGTAGCCGGCATCCTCCTCTCTACAGTTAATACAGTACCATGGCCCCCGCCGTGATG
GCTTCGTCGGCTACCACCGTCGCACCCTTCCAGGGGCTCAAGTCCACAGCCGGTCTCCCC
GTCAGCCGCCGCTCCAGCGCCAGCCTCGGCAGGGTCAGCAATGGCGGAAGGATCAGGTGC
ATGCAGGTGTGGCCGATTGAGGGTATCAAGAAGTTCGAGACCCTGTCTTACTTGCCACCC
CTCACCACGGAGGCCCTCCTGAAGCAGGTTGACTACCTGATCCGCTCCAAGTGGGTGCCC
TGCCTCGAGTTCAGCAAGGTTGGCTTCGTCTTCCGTGAGCACAACCTGCGGCAGGTGCAG
TGCGTCAGCTTCATCGCCTTCAGGCCACCGGGTTGCGAGGAGTCCGGCAAGGCATAAACT
ACGAGGTGAAACAATGGCCTATGTCGTATGAAGGTCTTCTGTGAACTTCACTTTTGTCCA
TGACTCTG

Homology of Contig U35_31474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g17600.2	149	3e-64	protein\|ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g08800.1	175	9e-69
Arabidopsis v10	None