- Probe CUST_16880_PI390587928
- Source Contig U35_11397
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16880_PI390587928 | Hv_44K_v2 | TCCTGAACCGGCGCCGACGGTCGGAGATGCTCACCACGCCAGGAGCCGGTCGGAGCCCCC | 513 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_58686.1 | 1817 | 2e-24 | 990 - 1049 | 100 | 60 / 60 | minus | ABC19066 |
| MLOC | AK361868 | 2749 | 7e-23 | 552 - 611 | 98 | 59 / 60 | plus | ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC02123 ABC19066 ABC45487 ABC50221 |
| JLOC1 | JLOC1_38143.1 | 2031 | 8e-25 | 1300 - 1359 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC26076 | 599 | 3e-25 | 514 - 573 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11397 | 603 | 3e-25 | 514 - 573 | 100 | 60 / 60 | plus |
Contig Sequence (603 bp)
>U35_11397 603 Hv_44K_v2 AATCCACCCCGGCCACCACCTCCCCCTCGATCCCCACATCCTGCTCTCCAACCGCGCGCC CTCCTCCCTCCCTCCCTGCCAGCCGGTGCACATGGACGGCGCGGCGGCCGCGGCGCTCGG CGCGTGGGAGGCCGTGCGGGGCTTCTTCACGCCGGCCACGCTCTTCCTCACCGTCAACCT CGTCATCGGCACCATCCTGCTCACCTCCCGCTCCCACCAGCGCCGCCGCCAGGGCGGCCA CGACGCCGACGACGCGCGCCGCCACGACCACCACCAGCAAGAACAACAACGGTTCCAACA CGTGGAGCCGCAGCAGCAGCAGCATCAGGAGGATCTGTACTACCGCGACCAGCAGCAACA GCAGCAGCAGTACGTGCCCCCGCCGCCGGCGCCGCTCGCGCGCACCTCGTCGGTGCTCGA CCGCCTCCGCTCCATCGGCCTATACCGCTTCCGCTCGGGCGACTTCCCGCCCGAGTACGG TGCTGGGGCCGACTCGCGGGACGTGACGGTCTCTCCTGAACCGGCGCCGACGGTCGGAGA TGCTCACCACGCCAGGAGCCGGTCGGAGCCCCCGGCGCGGGAGGAGGCGAGGCGGGCGCC GCC
Homology of Contig U35_11397 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |