barSeed - Barley Seed Development Database

Probe ABC25340

Source Contig ABC25340

barSeed

Links

Affymetrix Source Sequence (705 bp)

>ABC25340 705
AAGAAACTAAAGTATACTACTCGAGTTATTAATGAATCTTTGAGACTATATCCACAACCG
CCAGTTTTAATTCGTCGGTCCCTTGAGGATGACATGTTGGGGGAGTATCCAATCGGGAGG
GGAGAAGACATTTTTATATCCATCTGGAATCTTCATCGCTGCCCAAATCATTGGGATGAT
GCAGATGTTTTCAATCCAGAAAGGTGGCCTTTGGATGGACCAAATCCAAATGAGACAAAC
CAAAAATTCAGTTACATACCATTTGGTGGTGGACCAAGGAAATGTGTAGGTGATATGTTT
GCTACTTTTGAGAATGTGGTGGCAACAGCAATGCTTGTCAAGCGGTTTGATTTTCAGATG
GCTCCAGGAGCACCTCCGGTCATCTTCAGGGCTACCGGATTGATCCGCACGTGGTCCTTA
CTCACTCCTGTGGAAACCAGGGAGCCTTTGGTTACTGGGTGTGTCCGATGGGAAATGGTA
GCTCAGGTTATCTTCAACCGATATGGATGGCGGCATGCTAATAGGATTGGTCCTTAGCCC
AGCTTATCTGTGGGTTGTAGTCGGCTTTTCGGTGGTCTGATCGCCGTGTAATTTCTTTTG
TCTTGTTTTTCTCTTTTCTCAGACTACTTTGTAGTTTTGTCTCGGACCATTTTGCGTTAT
CAATAAAATGGCTGCATGCATCACTCGATGCAGAGGCCGGGCAAC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360309	2043	0.0	1327 - 2031	100	705 / 705	CUST_29792_PI390587928	ABC02360 ABC14804 ABC25340 ABC40037
AK361389	1416	3e-102	1083 - 1404	88	288 / 329	None	ABC12246 ABC14926 ABC25340
MLOC_35093.1	491	2e-95	1 - 211	97	205 / 212	None	ABC25340
MLOC_20488.1	229	6e-95	1 - 192	99	191 / 192	None	ABC02360 ABC14804 ABC25340
MLOC_3876.1	2225	3e-93	1135 - 1399	90	239 / 265	None	ABC02360 ABC25340
AK376099	2296	7e-89	1962 - 2276	86	279 / 326	CUST_277_PI390587928	ABC25340 ABC40037
MLOC_10958.1	2750	6e-55	2164 - 2298	96	129 / 135	CUST_29346_PI390587928 CUST_6663_PI390587928 CUST_6661_PI390587928 CUST_6660_PI390587928	ABC02358 ABC02360 ABC14804 ABC25340 ABC45454