barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_6660_PI390587928Hv_44K_v2TAGTATATAAAAGTCCTTTGCTGCTGGTTTTGTCGTGTGTTCTGTTACTCACCTATTACT1904GeneList: darkgrey
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1490.3341.5182.2590.9680.962
Raw 79.082269.7371125.4002550.533395.091423.470



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_10958.127507e-231506 - 15659859 / 60minus ABC02358 ABC02360 ABC14804 ABC25340 ABC45454
MLOCMLOC_10957.319307e-231506 - 15659859 / 60minus ABC02358 ABC02360 ABC45454
JLOC1JLOC1_7214.122584e-23859 - 9189859 / 60plus
Harvest21ABC0236022203e-251905 - 196410060 / 60plusABC02360
Harvest35U35_75022203e-251905 - 196410060 / 60plus



Contig Sequence (2220 bp)

>U35_750 2220 Hv_44K_v2
TGCCGCAGGCCGTCGGGTCGCTGGCTTCCGTCGCCGGGGAGGCCTTCTTCCTGCCGCTCT
ACGACCTCTTCCTCACCTACGGCGGCGTCTTCCGCCTCAACTTCGGGCCCAAGTCTTTCC
TCATCGTCTCTGATCCGGATGTAGCTAAGCATATCCTCAGGGACAACTCAAAGGCTTATT
CCAAGGGTATCCTTGCGGAAATACTGGAGTTTGTGATGGGCACAGGTCTGATCCCGGCTG
ATGGGGAGGTCTGGCGTGTTCGACGGCGTGCCATTGTACCAGCATTGCATCAGAAGTACG
TGACAGCGATGATAGGTCTCTTTGGAAACGCTTCAGACCGGCTCTGCCAGAAGCTCGACA
AGGCTGCTTCGGACGGGGAGGATGTGGAGATGGAATCTCTCTTCTCCCGACTAACGCTGG
ATGTCATCGGGAAGGCGGTGTTCAATTATGATTTTGATTCATTATCTTACGATAATGGAA
TAGTTGAGGCTGTGTATGTAACACTGCGGGAAGCAGAAATGCGGAGTACATCTCCTATTC
CAACATGGGAAATACCCATATGGAAAGACATCTCCCCTCGGCAGAGGAAGGTCAATGAAG
CGCTTGCACTGATAAATAATATTCTCGATGAACTAATTGCTACGTGCAAGAGGATGGTAG
ATGAAGAAGATCTGCAGTTTCATGAGGAATACATGAATGAGAAAGACCCTAGTATTCTTC
ACTTTCTATTGGCATCTGGAGATGATGTGTCCAGCAAGCAGCTCCGTGATGACCTGATGA
CAATGCTCATAGCTGGCCATGAGACCTCTGCAGCAGTCTTGACATGGACATTTTATCTTC
TATCTAAGTATCCCAACGTAATGTCCAAGCTCCAAGCTGAGGCTGATGCTGTTCTAGGAG
ATGGTCTGCCAACAATTGATGATGTGAAGAAACTGAAGTATACTACTCGAGTTATTAATG
AATCTTTGAGACTATACCCGCAGCCGCCAGTTTTAATTCGCCGCTCCCTTGAGGATGATA
TGCTAGGAGAGTACCCGATCGGCAAGGGAGAAGATATTTTTATATCCATCTGGAACCTTC
ATCGCTGCCCAAAGCATTGGGATGACGCGGATGTTTTCAATCCGGAAAGGTGGCCTTTGG
ACGGACCGAATCCAAATGAGACAAACCAAAAATTCAGTTACTTGCCATTTGGTGGCGGAC
CAAGGAAATGTGTAGGTGATATGTTTGCTACTTTTGAGACTGTGGTAGCAACAGCAATGC
TTGTCAAGCGATTTGATTTTCAGATGGCTCCAGGAGCACCTCCGGTCGAGATGACAACCG
GAGCAACGATTCACACAACTAAGGGACTGAACATGACTGTTACTCGGAGGATAAAGCCAC
CTGTAATTCCAAACTTAGAGATGAAAATCGTTTCCGATCCAGAAGGAAGCACAAGTTCTA
CTGCGTCAGTGGCTGTTTCTACTGCTAGTATTGCATCCGGAGAAGGTCAACAAGTGGAGG
TGTCGACAAGTCAAGTGTGATTTATCATTTTTGATGCTCAGATTGCAATGAGATACATAA
TGAACACCAAACAGTACAGTACAGAACAGAATCTTCCTGGCGTGCTTCTTTACAAGGAAA
AGCTCTCCTAAATGCTCCCAGGCATATTTTTGCGATACAGGCTACAAACACTTTTACATC
TATAGGATCTGCCTGCTACTCAAAAGTACCGCGGACACACATATTTACAGATCCACAAGT
ACCGGGCATGGGCTCCTGCGCCTCTAAAACTTCAGCATGGCCTCCAACGCGCGAAGAACG
TCATCGCGGGTAACTATACCTGTTAGCATTGTTTAGAATAATTCCGTTTAGCTTGAAACT
TGCTCCAAATAATAGTCGATGTTAAGGGGATGATACAGATCTAGTAGTATATAAAAGTCC
TTTGCTGCTGGTTTTGTCGTGTGTTCTGTTACTCACCTATTACTTGATTGTCCTGGTTTA
CTATCGGTAATCTGTGGATCTTCTTCTTGAGCATCAGAGCTGCGGCATCGGTCACTGTTT
TATCGCATGATAGCGTGATTGCTGGAGATGTCATCACATCTGCAATCTTCGTCCTTGACC
CATGTGAAGCCCTCGCGCGATCGCTCTTGACGACGACCCCGACACATCGGCGGGCGCTGT
CGACAACCGGGAGGCCTGACACGAGCTGNAAGTGTCCTTCAACCTCCACCAGTGCCTGGT



Homology of Contig U35_750 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g57290.36440.0protein|cytochrome P450, putative, expressed
Brachypodium v1_2Bradi3g55450.16420.0
Arabidopsis v10AT1G31800.15950.0| Symbols: CYP97A3, LUT5 | cytochrome P450, family 97, subfamily A, polypeptide 3 | chr1:11396440-11399470 FORWARD LENGTH=595