barSeed - Barley Seed Development Database

Probe ABC02360

Source Contig ABC02360

barSeed

Links

Affymetrix Source Sequence (2220 bp)

>ABC02360 2220
TGCCGCAGGCCGTCGGGTCGCTGGCTTCCGTCGCCGGGGAGGCCTTCTTCCTGCCGCTCT
ACGACCTCTTCCTCACCTACGGCGGCGTCTTCCGCCTCAACTTCGGGCCCAAGTCTTTCC
TCATCGTCTCTGATCCGGATGTAGCTAAGCATATCCTCAGGGACAACTCAAAGGCTTATT
CCAAGGGTATCCTTGCGGAAATACTGGAGTTTGTGATGGGCACAGGTCTGATCCCGGCTG
ATGGGGAGGTCTGGCGTGTTCGACGGCGTGCCATTGTACCAGCATTGCATCAGAAGTACG
TGACAGCGATGATAGGTCTCTTTGGAAACGCTTCAGACCGGCTCTGCCAGAAGCTCGACA
AGGCTGCTTCGGACGGGGAGGATGTGGAGATGGAATCTCTCTTCTCCCGACTAACGCTGG
ATGTCATCGGGAAGGCGGTGTTCAATTATGATTTTGATTCATTATCTTACGATAATGGAA
TAGTTGAGGCTGTGTATGTAACACTGCGGGAAGCAGAAATGCGGAGTACATCTCCTATTC
CAACATGGGAAATACCCATATGGAAAGACATCTCCCCTCGGCAGAGGAAGGTCAATGAAG
CGCTTGCACTGATAAATAATATTCTCGATGAACTAATTGCTACGTGCAAGAGGATGGTAG
ATGAAGAAGATCTGCAGTTTCATGAGGAATACATGAATGAGAAAGACCCTAGTATTCTTC
ACTTTCTATTGGCATCTGGAGATGATGTGTCCAGCAAGCAGCTCCGTGATGACCTGATGA
CAATGCTCATAGCTGGCCATGAGACCTCTGCAGCAGTCTTGACATGGACATTTTATCTTC
TATCTAAGTATCCCAACGTAATGTCCAAGCTCCAAGCTGAGGCTGATGCTGTTCTAGGAG
ATGGTCTGCCAACAATTGATGATGTGAAGAAACTGAAGTATACTACTCGAGTTATTAATG
AATCTTTGAGACTATACCCGCAGCCGCCAGTTTTAATTCGCCGCTCCCTTGAGGATGATA
TGCTAGGAGAGTACCCGATCGGCAAGGGAGAAGATATTTTTATATCCATCTGGAACCTTC
ATCGCTGCCCAAAGCATTGGGATGACGCGGATGTTTTCAATCCGGAAAGGTGGCCTTTGG
ACGGACCGAATCCAAATGAGACAAACCAAAAATTCAGTTACTTGCCATTTGGTGGCGGAC
CAAGGAAATGTGTAGGTGATATGTTTGCTACTTTTGAGACTGTGGTAGCAACAGCAATGC
TTGTCAAGCGATTTGATTTTCAGATGGCTCCAGGAGCACCTCCGGTCGAGATGACAACCG
GAGCAACGATTCACACAACTAAGGGACTGAACATGACTGTTACTCGGAGGATAAAGCCAC
CTGTAATTCCAAACTTAGAGATGAAAATCGTTTCCGATCCAGAAGGAAGCACAAGTTCTA
CTGCGTCAGTGGCTGTTTCTACTGCTAGTATTGCATCCGGAGAAGGTCAACAAGTGGAGG
TGTCGACAAGTCAAGTGTGATTTATCATTTTTGATGCTCAGATTGCAATGAGATACATAA
TGAACACCAAACAGTACAGTACAGAACAGAATCTTCCTGGCGTGCTTCTTTACAAGGAAA
AGCTCTCCTAAATGCTCCCAGGCATATTTTTGCGATACAGGCTACAAACACTTTTACATC
TATAGGATCTGCCTGCTACTCAAAAGTACCGCGGACACACATATTTACAGATCCACAAGT
ACCGGGCATGGGCTCCTGCGCCTCTAAAACTTCAGCATGGCCTCCAACGCGCGAAGAACG
TCATCGCGGGTAACTATACCTGTTAGCATTGTTTAGAATAATTCCGTTTAGCTTGAAACT
TGCTCCAAATAATAGTCGATGTTAAGGGGATGATACAGATCTAGTAGTATATAAAAGTCC
TTTGCTGCTGGTTTTGTCGTGTGTTCTGTTACTCACCTATTACTTGATTGTCCTGGTTTA
CTATCGGTAATCTGTGGATCTTCTTCTTGAGCATCAGAGCTGCGGCATCGGTCACTGTTT
TATCGCATGATAGCGTGATTGCTGGAGATGTCATCACATCTGCAATCTTCGTCCTTGACC
CATGTGAAGCCCTCGCGCGATCGCTCTTGACGACGACCCCGACACATCGGCGGGCGCTGT
CGACAACCGGGAGGCCTGACACGAGCTGNAAGTGTCCTTCAACCTCCACCAGTGCCTGGT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_3876.1	2225	0.0	1149 - 2214	99	1063 / 1066	None	ABC02360 ABC25340
AK360309	2043	0.0	433 - 1707	91	1161 / 1275	CUST_29792_PI390587928	ABC02360 ABC14804 ABC25340 ABC40037
MLOC_10958.1	2750	4e-56	1000 - 1125	98	124 / 126	CUST_29346_PI390587928 CUST_6660_PI390587928 CUST_6661_PI390587928 CUST_6663_PI390587928	ABC02358 ABC02360 ABC14804 ABC25340 ABC45454
MLOC_10957.3	1930	4e-56	1000 - 1125	98	124 / 126	CUST_6661_PI390587928 CUST_6660_PI390587928 CUST_6663_PI390587928 CUST_29346_PI390587928	ABC02358 ABC02360 ABC45454
AK371248	2660	1e-126	2411 - 2660	99	249 / 250	CUST_6661_PI390587928 CUST_29346_PI390587928	ABC02358 ABC02360 ABC08892 ABC45454
AK251025.1	928	2e-133	658 - 919	99	261 / 262	CUST_29346_PI390587928 CUST_6661_PI390587928	ABC02358 ABC02360 ABC45454
MLOC_10957.2	1524	2e-109	1303 - 1524	99	220 / 222	CUST_29346_PI390587928	ABC02358 ABC02360 ABC45454
MLOC_10957.1	1467	1e-130	1200 - 1459	99	258 / 260	CUST_6661_PI390587928 CUST_29346_PI390587928	ABC02358 ABC02360 ABC45454
MLOC_81150.2	2272	6e-134	1474 - 1769	96	284 / 296	None	ABC02360
MLOC_20488.1	229	2e-98	1 - 229	95	218 / 229	None	ABC02360 ABC14804 ABC25340
MLOC_28402.1	252	4e-81	67 - 252	96	179 / 186	None	ABC02360
MLOC_81150.1	2382	1e-80	1474 - 1658	96	178 / 185	None	ABC02360