barSeed - Barley Seed Development Database

Probe ABC03168

Source Contig ABC03168

barSeed

Links

Affymetrix Source Sequence (1557 bp)

>ABC03168 1557
GTCGCTGTCGCCCATTACTGCTCCGTCGTCGTCCACAGCGACGCCAACGCTGCACCCAGC
CAGACCCCGCGAGATCCAGAGCCTAGCACTAGCTGGCCGGGGAGGAGGAAGGTCCAGGAC
CCGCGAGACAGGCAAGGGGATGGCGGGCAGCGGAGGCGGCGCCTACAGGGCGGAGGACGA
CTACGACTACCTCTTCAAGGCGGTGATCATCGGCGACTCCGGCGTCGGCAAGTCCAACCT
GCTCTCGCGCTTCACCAAGAACGAGTTCTGCCTCGAATCCAAGTCCACCATCGGGGTCGA
GTTCGCCACCCGCAGCCTCCAGGTCGACGGCAAGGTCGTCAAGGCCCAGATTTGGGACAC
CGCTGGCCAGGAGAGATACCGTGCTATTACGAGTGCCTATTATAGAGGAGCAGTAGGTGC
GTTGCTGGTGTATGATGTCACTCGCCGTGCTACATTCGACAATGTGGCGCGCTGGCTAAA
AGAGCTAAGAGATCATACTGACCCTAGCATTGTTGTCATGCTAGTTGGCAACAAATCTGA
CCTTCGCCACTTGGTGGCTGTTTCAACTGAAGATGGGCAGGAATATGCTGAGGCGGAGTC
ACTGTACTTCATGGAAACATCTGCATTAGACGCGACAAATGTAGACAACGCTTTCTCAGA
AGTTTTGACTCAGATATACCGTATTGCGAGCAGGAAGACGGTTGATGCAGGAGACGACGG
CTCATCTGCCCCAAGCAAAGGGGAGAATATAAATGTGAAAGACGACGTGTCTTCGCTGAA
GAGAGCCGGCTGCTGCTCAAGTTAGGGTATAGATGCATTATTATTTGTTACGTTTTCTAC
CAGTTGGTGTATCTTGTATTGCAACAAAACAGATTTACTGATTCTCTCATTTTGCTGCGG
TTATGGTGATGGTTAGGTTGGTTCAGCTTTCACCTGAAACTGGTATGTCAGATTGATTAT
GATATTCTGCAAGTAATTTGTTTACAGTAGGATCTGAGCAATATCTCACTGTTTATTTTT
ATTGGAATCATGTAGGAATACTGCATGTTAGTAAGATAAAAATACTCCCTCCGTTTCTAA
ATATTAGTCTTTTTCGAAATTTCATTAGGTGACTACATATGAATGTATATAAACATACTT
TAGAGTATAAATTTACTCATTTTGTTTCATATGTAGTCCTCTAGAGAAATCTCTAAAAAG
ACTTATATTTAGAAACGGAGGGAGTAGAAAGTACCAGCAGGCTAAGAATCCTGCATAAGT
ACAGAAAACACACTAAAAAGGACCTCGGAACTGAACACGCAAAATTGAACATTTCCATCA
CTAGCAGTGGCCCATTGGTGAGCATCGTCATTCATTTGCAATTGGTGTCTGTTCAAACTT
AAGCTGTGTTTGATTGAGTTGCAGATTCTGTAAAAGTTGTGGGAAGCTGTGAGTTTCAGC
TGTGGACAAGTTGAAAGCTGTTTGACTGATACAACCGTGAAACTGTAGATTTGACTGTGA
ATTGTCTGTAATGATCCTGAGTTGGGAGTCAATATTTTGTATGTTCAATATAATCAG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248771.1	1028	0.0	23 - 1011	99	988 / 989	CUST_10530_PI390587928	ABC03165 ABC03166 ABC03168 ABC03169 ABC03170
MLOC_74829.1	2764	0.0	2123 - 2764	100	642 / 642	CUST_10530_PI390587928	ABC03168
MLOC_73877.1	1822	0.0	1411 - 1785	100	375 / 375	None	ABC03165 ABC03166 ABC03168 ABC03169 ABC03170
MLOC_73877.2	1551	0.0	1140 - 1514	100	375 / 375	None	ABC03165 ABC03166 ABC03168 ABC03169 ABC03170
MLOC_73877.3	1488	0.0	1046 - 1420	100	375 / 375	None	ABC03165 ABC03166 ABC03168 ABC03169 ABC03170
MLOC_70957.2	1101	2e-132	164 - 808	80	519 / 648	None	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170
AK371399	1396	1e-100	217 - 731	80	413 / 518	CUST_8049_PI390587928	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC21862
MLOC_73877.4	261	1e-100	5 - 204	100	200 / 200	None	ABC03168
MLOC_70957.1	3469	2e-82	3029 - 3247	92	202 / 219	CUST_10529_PI390587928	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170
MLOC_57640.2	1071	3e-81	140 - 526	81	316 / 390	CUST_8050_PI390587928 CUST_289_PI415269222	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC10901 ABC21862 ABC36918
MLOC_57641.2	3588	3e-81	2654 - 3040	81	316 / 390	CUST_8050_PI390587928 CUST_25982_PI390587928 CUST_289_PI415269222	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC10901 ABC21862 ABC36918
MLOC_57641.3	2148	4e-75	1794 - 2010	90	196 / 217	CUST_25982_PI390587928	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC21862
MLOC_57640.1	1968	4e-75	520 - 736	90	196 / 217	CUST_8050_PI390587928 CUST_289_PI415269222	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC21862 ABC36918
AK365552	1176	4e-65	246 - 471	87	196 / 226	CUST_8047_PI390587928 CUST_24983_PI390587928	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC09906 ABC09907 ABC21862
AK370127	1111	2e-63	185 - 443	84	217 / 259	CUST_24983_PI390587928	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC09906 ABC09907 ABC21862