barSeed - Barley Seed Development Database

Probe CUST_10529_PI390587928

Source Contig U35_15262

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10529_PI390587928	Hv_44K_v2	CATTCCATTGCAACCATGCTTGAACTTCTCAACTTGATTGAAATTTGCTTCACGTTTGCG	952	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.388	1.548	1.088	0.939	0.433	0.461
Raw	1895.363	3313.434	2013.930	2722.873	445.692	511.590

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70957.1	3469	6e-24	10 - 68	100	59 / 59	minus	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170
JLOC1	JLOC1_47116.1	1136	3e-24	1009 - 1067	100	59 / 59	plus
JLOC1	JLOC1_47117.1	1016	2e-21	1 - 54	100	54 / 54	minus
Harvest21	ABC03169	1007	1e-24	937 - 995	100	59 / 59	plus	ABC03169
Harvest35	U35_15262	1041	3e-25	953 - 1012	100	60 / 60	plus

Contig Sequence (1041 bp)

>U35_15262 1041 Hv_44K_v2
CTCCCCCCTCGCTCTCCTCCTCCTTCGCCGCTCCCCAGACCCAGATCGCCGACGCGACGA
GAGCAATGGCGGCGGGGTACCGGGCGGAGGACGACTACGACTACCTCTTCAAGGTCGTCC
TCATCGGCGACTCCGGCGTCGGCAAGTCCAACCTGCTCTCCCGCTTCACCCGCAACGAGT
TCAGCCTCGAGTCCAAGTCCACCATCGGGGTCGAGTTCGCCACCCGCTCCCTCCAGGTCG
ACGGCAAGGTCGTCAAGGCCCAGATTTGGGACACCGCCGGCCAGGAACGATACCGTGCTA
TCACTAGCGCATACTACCGTGGTGCTGTAGGAGCGTTGCTTGTGTATGACGTCACTCGGC
ACGCAACCTTCGAGAATGCAGAGCGCTGGCTGAAGGAGTTGAGGGACCATACGGATCCGA
ACATAGTTGTCATGCTTGTTGGCAACAAGTCTGATCTCCGCCATCTTGTGGCAGTCCCAA
CCGACGAAGGGAAGGCGTTTGCAGAGAGGGAGTCGCTCTATTTCATGGAGACCTCTGCCC
TTGAGTCGACCAATGTGGAGGACGCGTTTGCGGAGGTGTTGAAACAGATTTACCGCATCG
TGAGCAAGAGGGCGGTTGATGCGGGCGAAGACTCGGCCTCCGGCCCTGGTAAGGGTGAGA
AGATCAACATGAAGGACGATGTCTCGGCGGTGAAGAAGGGCGGGTGCTGCTCTAGCTGAG
GCGCCATGTTGTATTTTTTGTTGCTGAGCTTTTGTGATGTGGCCTTTCCAGCGACCGGGA
ATTATTAGTAGCAGTAGTAGCAAGTATTATGATTATGATGTTACTTAGAGAAGTTGAAGT
TTGTTACTGAACCGAGATGTTTGTCTAGATGGGGTGAGATCTTCCTTCATATTGTTGTAT
GGTCAGGCAATCGGCATGGAGTATTGTTTTTCAAAAAAAAAAAAAAAAAGGTCATTCCAT
TGCAACCATGCTTGAACTTCTCAACTTGATTGAAATTTGCTTCACGTTTGCGAAAAAAAA
AAAAAAAATAAAAAAAAAAAA

Homology of Contig U35_15262 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35814.1	218	3e-143	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g38190.1	218	4e-148
Arabidopsis v10	AT4G18800.1	214	4e-126	\| Symbols: ATHSGBP, ATRAB11B, ATRABA1D, RABA1d \| RAB GTPase homolog A1D \| chr4:10320156-10321339 REVERSE LENGTH=214