barSeed - Barley Seed Development Database

Probe ABC03165

Source Contig ABC03165

barSeed

Links

Affymetrix Source Sequence (955 bp)

>ABC03165 955
GGCCGGAGGGGAGGGGGGAGGGAGATGGCGTACAGGGCGGAGGACGACTACGACTACCTG
TTCAAGGTGGTGCTGATCGGGGACTCCGGGGTGGGCAAGTCCAACCTGCTCACCCGCTTC
ACCCGCAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGC
AGCATCCACGTCGACGACAAGGTCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAG
AGGTACCGGGCGATCACGAGCGCGTACTACCGCGGGGCGGTCGGCGCCCTGGTCGTCTAC
GACGTCACGAGGCACGTCACATTCGAGAACGTCGAGAGGTGGCTGAGGGAGCTCAAGGAC
CACACGGACGCCAACATCGTGATCATGCTCGTGGGGAACAAGGCGGACCTGCGCCACCTC
AGGGCCGTCCCTTCCGAGGACGCCAAGGCGTTCGCCGAGAGGGAGAACACCTTCTTCATG
GAGACGTCCGCCCTGGAGGCCATGAACGTCGAGGACGCCTTCACCGAGGTGCTCTCCCAG
ATCTACCACGTGGTGAGCAAGAAGGCCCTCGACATCGGCGACGACCCCGCCGCGCCTCCC
AAGGGCAAGACCATCAGCGTCGGCTCCAAGGACGACGTGTCCGCGGTGAAGAAATCCACC
TGCTGCTCGTCTTAGCTTAAGCTCAGGATGGTGGCATCTTATACAGTAGGGGGGAGGGCA
CTATGTTATTGCAGTCATAGTCCTCATTTGTATTCATGCGCTATCGAGTGTCTCAATGTT
CATTTTGCCATATTTTTCATACATTTGATTCGTTCACGACTACAGCTTTTGCTGGTATAG
TTTAGGGGTTTGGAAGTGTGAGGTTATCGTGAATTTCTTATAGGCCTTTTCCTTGGATGT
GTTTCTACCTCTTGGGTCTGTGTATTCCTTGAATCTGCTTATTTATACAATTCCA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_57640.2	1071	0.0	114 - 1063	99	949 / 951	CUST_8050_PI390587928 CUST_289_PI415269222	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC10901 ABC21862 ABC36918
MLOC_57641.2	3588	0.0	2628 - 3577	99	949 / 951	CUST_8050_PI390587928 CUST_25982_PI390587928 CUST_289_PI415269222	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC10901 ABC21862 ABC36918
MLOC_57640.1	1968	3e-123	494 - 736	99	242 / 243	CUST_8050_PI390587928 CUST_289_PI415269222	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC21862 ABC36918
MLOC_548.2	1245	0.0	352 - 992	85	546 / 641	CUST_36843_PI390587928 CUST_15665_PI390587928	ABC03165 ABC03167 ABC21862 ABC36918
AK371399	1396	5e-156	214 - 842	83	521 / 631	CUST_8049_PI390587928	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC21862
MLOC_76794.1	1181	6e-146	1 - 608	82	501 / 610	CUST_8049_PI390587928	ABC03165 ABC03166 ABC03167 ABC03169 ABC03170 ABC21862
MLOC_57641.3	2148	3e-123	1768 - 2010	99	242 / 243	CUST_25982_PI390587928	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC21862
AK372857	987	1e-117	172 - 659	82	405 / 491	None	ABC03165 ABC03166 ABC03167 ABC03169 ABC03170 ABC21862
MLOC_70957.2	1101	2e-116	263 - 799	81	437 / 540	None	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170
MLOC_548.1	1939	1e-68	353 - 590	87	206 / 238	CUST_36843_PI390587928 CUST_15665_PI390587928	ABC03165 ABC36918
MLOC_63864.1	1215	6e-101	390 - 933	79	436 / 551	None	ABC03165 ABC03166 ABC03167 ABC03170 ABC09906 ABC09907 ABC21862
AK248771.1	1028	1e-82	157 - 572	80	337 / 419	CUST_10530_PI390587928	ABC03165 ABC03166 ABC03168 ABC03169 ABC03170
MLOC_70957.1	3469	2e-80	3022 - 3238	92	199 / 217	CUST_10529_PI390587928	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170
MLOC_73877.1	1822	2e-76	1409 - 1651	88	215 / 243	None	ABC03165 ABC03166 ABC03168 ABC03169 ABC03170
MLOC_73877.2	1551	6e-76	1139 - 1380	88	214 / 242	None	ABC03165 ABC03166 ABC03168 ABC03169 ABC03170
MLOC_73877.3	1488	2e-75	1046 - 1286	88	213 / 241	None	ABC03165 ABC03166 ABC03168 ABC03169 ABC03170
AK370127	1111	4e-63	166 - 654	76	375 / 494	CUST_24983_PI390587928	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC09906 ABC09907 ABC21862
AK365552	1176	5e-62	208 - 715	76	389 / 515	CUST_8047_PI390587928 CUST_24983_PI390587928	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC09906 ABC09907 ABC21862
MLOC_73105.1	1171	1e-57	540 - 841	80	245 / 305	None	ABC03165 ABC10901