barSeed - Barley Seed Development Database

Probe ABC02018

Source Contig ABC02018

barSeed

Links

Affymetrix Source Sequence (1053 bp)

>ABC02018 1053
AGTGGTTAGGCTAGAGTGAGTGCTAGACCGTACCTAGGGGTCTGATCTGTGATAAAATAA
TAGAGCAGGGGTGGTGGCTGAAAAGCAAAACTCCCTTCCATTTTAAGCGCATGCCTGAGC
CAGAGTAGCCGAGCAGGAGGAGGACAATCAGTCGACTCAATCTCTCTTCCTCCCCCAGCG
CCGTCGCCCGTCGTTCTGCCGCCTCCAACCGCAGCAGCGCAGGTAGGCAGCAGGATGAGC
CAAGAGGACTCGACCAGCGCCGCTGCCGCGCAGCAGCCGACGAGCCGGCCGGCACCCAAG
CTCAACGAGAGGATCCTGTCGTCGCTGTCGAGGAGGGCGGTGGCCGCGCATCCGTGGCAC
GATCTTGAGATCGGCCCTGGGGCTCCTGCCGTGTTTAATGTTGTTGTTGAGATCACAAAG
GGAAGCAAAGTAAAATATGAGCTTGATAAGAAAACTGGACTGATTAAGGTTGATAGAGTT
CTGTACTCATCAGTTGTATATCCTCACAACTATGGTTTCATTCCAAGGACGCTTTGTGAA
GACAACGACCCAATGGATGTGTTGGTCCTAATGCAGGAGCCTGTTATTCCTGGTTCTTTC
CTCCGAGCTAGAGCAATTGGCCTTATGCCCATGATTGATCAGGGTGAAAAGGATGACAAG
ATAATAGCAGTCTGCGCGGATGATCCTGAATACCGTCACTACAACGACATCAGTGAGCTG
TCTCCCCACCGCCTCCAAGAGATCAAGCGCTTCTTTGAAGACTACAAGAAGAATGAGAAC
AAGGAGGTCGCTGTCGATGCGTTCTTACCTGCGACCACTGCCCGCGAGGCCATTCAGTAT
TCGATGGACCTGTATGCGCAGTATATTCTGCAGAGCTTAAGGCAGTAGCATGTTGGTGGT
TGTATCGCGGAAATCTTGTATTAATAACAAGTGGGGAATAGCCGAGACTATGTGTGTTAT
AAATAAATGCGCAACAATGTGTACTCACACTATTTATGAAGATTAAGTGATGCTTTATGA
TTGGGAATGTTTTAGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK356900	1096	0.0	3 - 905	99	899 / 903	CUST_18760_PI390587928	ABC02018 ABC02019 ABC02020 ABC02021 ABC32547 ABC33843
MLOC_75794.1	743	0.0	4 - 743	99	734 / 742	CUST_18760_PI390587928	ABC02018
MLOC_75794.2	739	0.0	4 - 739	98	730 / 742	CUST_18760_PI390587928	ABC02018
AK366118	2108	1e-133	3 - 270	99	265 / 268	CUST_18760_PI390587928	ABC02018 ABC02019 ABC02020 ABC02021 ABC32547 ABC33843
MLOC_37823.1	400	2e-141	4 - 279	99	275 / 276	None	ABC02018 ABC02020 ABC32547 ABC33843
MLOC_77595.1	1246	2e-90	248 - 836	77	454 / 590	None	ABC02018 ABC02021
AK249309.1	1024	1e-87	224 - 657	80	350 / 436	CUST_28192_PI390587928 CUST_18759_PI390587928	ABC02018 ABC02019 ABC02022
MLOC_32990.1	1129	1e-87	464 - 897	80	350 / 436	CUST_28192_PI390587928	ABC02018 ABC02019 ABC02022
MLOC_32990.2	993	1e-87	319 - 752	80	350 / 436	CUST_28192_PI390587928	ABC02018 ABC02019 ABC02022
MLOC_32990.3	978	1e-87	267 - 700	80	350 / 436	CUST_28192_PI390587928	ABC02018 ABC02019 ABC02022
AK249194.1	1076	7e-71	267 - 778	76	392 / 514	None	ABC02018 ABC14314
MLOC_33482.2	1276	7e-71	376 - 887	76	392 / 514	None	ABC02018 ABC14314
MLOC_33482.1	1255	2e-65	594 - 1044	77	347 / 452	None	ABC02018 ABC14314
MLOC_33482.3	1165	7e-51	496 - 866	77	285 / 372	None	ABC02018 ABC14314