- Probe CUST_28192_PI390587928
- Source Contig U35_28130
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28192_PI390587928 | Hv_44K_v2 | GAAAATAAGGAGGGTTGCAGTGAATGATTTCCTCCCAGCAGAAGATGCCATCAACGCAAT | 670 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.841 | 1.258 | 2.005 | 1.921 | 0.833 | 0.753 |
| Raw | 826.030 | 1953.920 | 2646.697 | 4079.970 | 608.739 | 603.999 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK249309.1 | 1024 | 3e-22 | 644 - 702 | 98 | 59 / 60 | plus | ABC02018 ABC02019 ABC02022 |
| MLOC | MLOC_32990.1 | 1129 | 3e-22 | 419 - 477 | 98 | 59 / 60 | minus | ABC02018 ABC02019 ABC02022 |
| MLOC | MLOC_32990.2 | 993 | 3e-22 | 274 - 332 | 98 | 59 / 60 | minus | ABC02018 ABC02019 ABC02022 |
| MLOC | MLOC_32990.3 | 978 | 3e-22 | 222 - 280 | 98 | 59 / 60 | minus | ABC02018 ABC02019 ABC02022 |
| MLOC | MLOC_32988.2 | 5522 | 3e-22 | 2487 - 2545 | 98 | 59 / 60 | minus | ABC02019 ABC06879 |
| JLOC1 | JLOC1_21433.4 | 1198 | 1e-22 | 625 - 683 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_21433.3 | 1278 | 1e-22 | 705 - 763 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_21433.2 | 1143 | 1e-22 | 570 - 628 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_21433.1 | 1362 | 1e-22 | 789 - 847 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC26811 | 742 | 3e-25 | 671 - 730 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02023 | 888 | 5e-23 | 314 - 372 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC02019 | 1032 | 5e-23 | 634 - 692 | 98 | 59 / 60 | plus | ABC02019 |
| Harvest35 | U35_28130 | 742 | 3e-25 | 671 - 730 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15057 | 1038 | 5e-23 | 634 - 692 | 98 | 59 / 60 | plus |
Contig Sequence (742 bp)
>U35_28130 742 Hv_44K_v2 GAGAGAGAGCAAAGTCAAGTATGAGTTGGACAAAGCAACTGGTCTTATCAAGGTCAGCTA GCAGTGAATTATTTGGCCTTTGTGTGCATCCTGTTGAATCCTAAAGAATGTCACTGGAAT CCATCTGTTATGTTCAGAATGTAAAAGAGAGATTAAAGACATCATCGGTTAACACTGCAT GTACAAATTGAGGAGTTCTGTCAATACTACCGACAAAAGGGCATGCCTTAATAAAGTGCC ACTAACTGTAGGTTGGTCAGTAAGTAGTAGCACATATGAATGTGGAGCACTTGCATAGTT GCATGTTACAACTACTTTTATTCTGCATTGATAAAAGAGAACTTGAATGTTTTGTTTGTT CCAGGTTGATCGTGTTCTTTACTCCTCAGTTGTGTACCCACACAACTATGGCTTCATTCC ACGCACACTCTGTGAGGACAATGACCCGATGGACGTCCTTGTCCTGATGCAGGAACAAGT TGTCCCTGGTTGCTTCCTGCGTGCCCGTGCTATTGGGCTTATGCCTATGATTGACCAGGG TGAGAAAGATGACAAGATCATAGCTGTCTGTGCTGATGATCCTGAGTACCGTCACTTCAG AGACATCAGTGAACTTCCCCCGCATCGCCTACAGGAGATCCGTCGCTTCTTTGAAGACTA CAAGAAGAATGAAAATAAGGAGGGTTGCAGTGAATGATTTCCTCCCAGCAGAAGATGCCA TCAACGCAATCAAGTACTCAAT
Homology of Contig U35_28130 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g47600.1 | 215 | 2e-71 | protein|soluble inorganic pyrophosphatase, putative, expressed |
| Brachypodium v1_2 | Bradi3g52740.3 | 201 | 7e-72 | |
| Arabidopsis v10 | AT2G46860.1 | 216 | 2e-69 | | Symbols: AtPPa3, PPa3 | pyrophosphorylase 3 | chr2:19253843-19255060 FORWARD LENGTH=216 |