barSeed - Barley Seed Development Database

Probe CUST_18760_PI390587928

Source Contig U35_15056

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18760_PI390587928	Hv_44K_v2	TGTTATTCCTGGTTCTTTCCTCCGAGCTAGAGCAATTGGCCTTATGCCCATGATTGATCA	581	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.137	0.179	0.696	2.040	1.555	2.299
Raw	491.765	1014.021	3485.803	16224.743	4308.133	6914.300

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356900	1096	2e-24	448 - 507	100	60 / 60	plus	ABC02018 ABC02019 ABC02020 ABC02021 ABC32547 ABC33843
MLOC	AK366118	2108	2e-24	1665 - 1724	100	60 / 60	plus	ABC02018 ABC02019 ABC02020 ABC02021 ABC32547 ABC33843
MLOC	MLOC_75794.1	743	2e-24	126 - 185	100	60 / 60	minus	ABC02018
MLOC	MLOC_75794.2	739	2e-24	126 - 185	100	60 / 60	minus	ABC02018
JLOC1	JLOC1_50554.2	782	8e-25	525 - 584	100	60 / 60	plus
JLOC1	JLOC1_50554.1	786	8e-25	529 - 588	100	60 / 60	plus
Harvest21	ABC02018	1053	3e-25	582 - 641	100	60 / 60	plus	ABC02018
Harvest35	U35_15056	1221	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (1221 bp)

>U35_15056 1221 Hv_44K_v2
AGTGGTTAGGCTAGAGTGAGTGCTAGACCGTACCTAGGGGTCTGATCTGTGATAAAATAA
TAGAGCAGGGGTGGTGGCTGAAAAGCAAAACTCCCTTCCATTTTAAGCGCATGCCTGAGC
CAGAGTAGCCGAGCAGGAGGAGGACAATCAGTCGACTCAATCTCTCTTCCTCCCCCAGCG
CCGTCGCCCGTCGTTCTGCCGCCTCCAACCGCAGCAGCGCAGGTAGGCAGCAGGATGAGC
CAAGAGGACTCGACCAGCGCCGCTGCCGCGCAGCAGCCGACGAGCCGGCCGGCACCCAAG
CTCAACGAGAGGATCCTGTCGTCGCTGTCGAGGAGGGCGGTGGCCGCGCATCCGTGGCAC
GATCTTGAGATCGGCCCTGGGGCTCCTGCCGTGTTTAATGTTGTTGTTGAGATCACAAAG
GGAAGCAAAGTAAAATATGAGCTTGATAAGAAAACTGGACTGATTAAGGTTGATAGAGTT
CTGTACTCATCAGTTGTATATCCTCACAACTATGGTTTCATTCCAAGGACGCTTTGTGAA
GACAACGACCCAATGGATGTGTTGGTCCTAATGCAGGAGCCTGTTATTCCTGGTTCTTTC
CTCCGAGCTAGAGCAATTGGCCTTATGCCCATGATTGATCAGGGTGAAAAGGATGACAAG
ATAATAGCAGTCTGCGCGGATGATCCTGAATACCGTCACTACAACGACATCAGTGAGCTG
TCTCCCCACCGCCTCCAAGAGATCAAGCGCTTCTTTGAAGACTACAAGAAGAATGAGAAC
AAGGAGGTCGCTGTCGATGCGTTCTTACCTGCGACCACTGCCCGCGAGGCCATTCAGTAT
TCGATGGACCTGTATGCGCAGTATATTCTGCAGAGCTTAAGGCAGTAGCATGTTGGTGGT
TGTATCGCGGAAATCTTGTATTAATAACAAGTGGGGAATAGCCGAGACTATGTGTGTTAT
AAATAAATGCGCAACAATGTGTACTCACACTATTTATGAAGATTAAGTGATGCTTTATGA
TTGGGAATTTTAAAAAAAAAAAAAAAAAAAATTCATATATCCATTTTGAATCCTGGCTGC
AGCAGCCTGTGTTTAGATAGGCCTGTTTGGTTGCTGTCCTGGCCAACTCGACTGGGCCAC
GCTTCTTTCCCTTTCTCTGTTTCTGGTTTGGAGAAAGCATTGTATTTTCGTCATGATATA
TAATGAAAAGGGGAGCAGCCC

Homology of Contig U35_15056 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59040.1	214	2e-135	protein\|soluble inorganic pyrophosphatase, putative, expressed
Brachypodium v1_2	Bradi5g27030.1	215	9e-135
Arabidopsis v10	AT1G01050.1	212	1e-121	\| Symbols: AtPPa1, PPa1 \| pyrophosphorylase 1 \| chr1:31382-32670 REVERSE LENGTH=212