barSeed - Barley Seed Development Database

Probe ABC01393

Source Contig ABC01393

barSeed

Links

Affymetrix Source Sequence (1701 bp)

>ABC01393 1701
CCGCCTCGCTCTCACGCCGCTCGCGTCACTCCGCGCTCCCACGAACCACCCCCAAATTCC
GTCAACGCGCCAACCCCGAGAAAAGCGCTTGAGAAATGGCCGAAGAGGATGTCCAGCCGA
TTGTGTGTGACAATGGCACCGGAATGGTCAAGGCTGGATTCGCCGGCGACGACGCGCCGA
GGGCCGTGTTCCCCAGCATCGTGGGGAGGCCGCGGCACACGGGGGTGATGGTGGGCATGG
GGCAGAAGGACGCGTACGTGGGCGACGAGGCGCAGTCGAAGCGAGGCATCCTGACGCTCA
AGTACCCGATCGAGCACGGCGTGGTGGGCAACTGGGACGACATGGAGAAGATCTGGCACC
ACACCTTCTACAACGAGCTCCGGGTGGCGCCGGAGGAGCACCCCGTGCTGCTCACGGAGG
CGCCCATGAACCCCAAGGCCAACCGGGAGAAGATGACCCAGATCATGTTCGAGACCTTCA
ACTGCCCCGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTCTACGCCAGCGGCCGGA
CCACCGGCATCGTCATGGACTCGGGCGACGGCGTCAGCCACACCGTCCCCATCTACGAGG
GCTTCACGCTCCCCCACGCCATCATCCGGCTGGACCTCGCCGGGCGCGACCTCACCGACG
GCCTCATGAAGATCATGACGGAGAGGGGCTACTCCTTCACCACCACCGCCGAGCGGGAAA
TCGTCAGAGACATCAAGGAGAAGCTCGCCTACGTCGCCCTCGACTACGAGCAGGAGCTGG
AGACCGCCAGGACCAGCTCCGCCGTCGAGAAGAACTACGAGCTGCCGGACGGCCAGGTGA
TCACCATCGGGGCGGAGCGGTTCAGGTGCCCCGAGGTGCTCTTCCAGCCGTCCATGATCG
GCATGGAGGCCGCAGGCATCCACGAGGCCACGTACAACTCCATCATGAAGTGCGATGTCG
ATATCAGGAAGGATCTGTACGGGAATGTCGTGCTCAGCGGGGGTTCCACCATGTTCCCTG
GGATCGCCGACCGTATGAACAAGGAGATCACCGCGCTCGCGCCCAGCAGCATGAGGGTGA
AGGTGGTCGCTCCGCCGGAGAGGAAGTACAGTGTGTGGATCGGCGGCTCCATTCTCGCCT
CCCTCAGTACCTTCCAGCAGATGTGGATCTCCAAGGCAGAGTACGACGAAGCTGGCCCGT
CGATCGTCCACATGAAGTGCTTCTGATCAGTCCATGGCTTGCCAACCTGTACCTGTCATT
CAGTTGCTTGAGGTCCAAATCGCAGATGCTTGAACGTGTCATGGTTTCCACTGCGTCGTG
GTTGGCTGAAAGTGTTTTGGTCATGGAACAAATTTGAAAGGTAAGGTCTGATTGATGGTT
TCGAACGATTCTGTAGGGCGTCGGGTCAGTTTCAGTGGGTTCACTGAAGGTGGGTTGTTC
AGCATGCAGTCTGGGGCATTTCTGTCGGGTTCGGTGATTCAGCTCGTGCGTGTGCTGGAA
ACCTGAAACAGAGTGTGTGTTTGTTTGCACCACCCCGGCGTGGGTGTTGATTCTTGTACC
TTTTGTAGCGGGGGTTCTTGTCAAACTACCTGAAAGCTTATTTTGTTGGTACTTAAGCAT
TTGTACATTTAAATTATTGAGGGGATTTTATGTTTGTTATGTCTTGTCTTTTGTATATGA
NGTACGTACACTTTTATATAC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_73132.2	1905	0.0	1 - 1642	100	1642 / 1642	CUST_38190_PI390587928	ABC01389 ABC01393 ABC01397 ABC05177
MLOC_73132.1	1231	7e-53	30 - 143	100	114 / 114	CUST_38190_PI390587928	ABC01389 ABC01393 ABC05177
MLOC_7384.1	1603	0.0	140 - 1259	87	972 / 1120	CUST_6150_PI390587928 CUST_31193_PI390587928 CUST_11707_PI390587928	ABC01389 ABC01390 ABC01391 ABC01393 ABC01397
AK366404	1207	0.0	68 - 1157	82	898 / 1090	None	ABC01389 ABC01393 ABC01397 ABC45368
AK369798	1224	0.0	85 - 1160	83	890 / 1078	CUST_31193_PI390587928	ABC01389 ABC01393 ABC01397 ABC45368
MLOC_74533.1	1770	0.0	264 - 1383	81	911 / 1122	CUST_38212_PI390587928 CUST_38217_PI390587928	ABC01389 ABC01390 ABC01393 ABC01394 ABC01397 ABC47406
MLOC_59829.1	1782	0.0	414 - 1533	81	905 / 1121	CUST_489_PI415269222	ABC01389 ABC01390 ABC01391 ABC01393 ABC01397
MLOC_59829.2	1776	0.0	459 - 1532	80	865 / 1075	CUST_489_PI415269222	ABC01389 ABC01390 ABC01393 ABC01397
AK248710.1	1530	0.0	141 - 1277	80	907 / 1139	CUST_26523_PI390587928 CUST_38587_PI390587928 CUST_3627_PI390587928	ABC01393 ABC05177 ABC37901
MLOC_56003.1	1701	0.0	397 - 1533	80	906 / 1139	CUST_38587_PI390587928 CUST_3627_PI390587928	ABC01393 ABC05177 ABC37901
MLOC_56003.2	1550	0.0	166 - 1302	80	906 / 1139	CUST_26523_PI390587928 CUST_38587_PI390587928 CUST_3627_PI390587928	ABC01393 ABC05177 ABC37901
MLOC_56003.3	1637	0.0	309 - 1382	79	852 / 1076	CUST_26523_PI390587928 CUST_38587_PI390587928 CUST_3627_PI390587928	ABC01393 ABC05177 ABC37901
AK369289	1379	0.0	91 - 1190	78	863 / 1108	None	ABC01393 ABC01394 ABC01397