- Probe CUST_3627_PI390587928
- Source Contig U35_290
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3627_PI390587928 | Hv_44K_v2 | TTTGAAACCTTCAGTTGCCCAGCAATGTATGTTGCAATCCAGGCCGTTCTGTCCTTGTAT | 505 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.085 | 0.114 | 0.998 | 2.875 | 1.725 | 1.574 |
| Raw | 47.707 | 90.449 | 743.027 | 3417.440 | 718.817 | 717.136 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248710.1 | 1530 | 2e-24 | 521 - 580 | 100 | 60 / 60 | plus | ABC01393 ABC05177 ABC37901 |
| MLOC | MLOC_56003.4 | 1844 | 2e-24 | 229 - 288 | 100 | 60 / 60 | plus | ABC05177 ABC37901 |
| MLOC | MLOC_56003.3 | 1637 | 2e-24 | 626 - 685 | 100 | 60 / 60 | plus | ABC01393 ABC05177 ABC37901 |
| MLOC | MLOC_56003.1 | 1701 | 2e-24 | 777 - 836 | 100 | 60 / 60 | plus | ABC01393 ABC05177 ABC37901 |
| MLOC | MLOC_56003.2 | 1550 | 2e-24 | 546 - 605 | 100 | 60 / 60 | plus | ABC01393 ABC05177 ABC37901 |
| JLOC1 | JLOC1_36182.2 | 1642 | 8e-25 | 545 - 604 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36182.1 | 1740 | 8e-25 | 643 - 702 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05179 | 797 | 3e-25 | 506 - 565 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05178 | 1516 | 3e-25 | 516 - 575 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_290 | 659 | 3e-25 | 506 - 565 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_156 | 1544 | 3e-25 | 516 - 575 | 100 | 60 / 60 | plus |
Contig Sequence (659 bp)
>U35_290 659 Hv_44K_v2 GCCGTATTCGGTATTCCTTCCTTCGTCTCGCCCCGCTGCCGCACCAGTCGTTCGTCCGCC GAGCTCTCCAGAAGGCCGAAGCCGCCGCCGTCCACGCCCCGTGAACAGATTTCTGTTACG GAGAACTTGAGAAATGGCTGATGAGGATGTCCAACCTATCGTGTGCGACAACGGCACTGG AATGGTCAAGGCTGGTTTTGCCGGTGATGATGCACCCAGGGCTGTCTTTCCCAGCATTGT AGGAAGGCCACGCCATACTGGTGTCATGGTTGGTATGGGCCAAAAGGATGCCTATGTGGG CGATGAAGCTCAGGCGAAAAGAGGTATCCTGACTTTGAAGTACCCCATTGAACATGGCAT TGTCAACAACTGGGATGACATGGAGAAAATATGGCATCACACATTCTACAACGAGCTCCG TGTCGCACCCGAGGATCATCCTGTGTTGCTGACTGAGGCCCCTCTCAACCCCAAGGCCAA CAGAGAAAAAATGACCCAGATCATGTTTGAAACCTTCAGTTGCCCAGCAATGTATGTTGC AATCCAGGCCGTTCTGTCCTTGTATGCCAGCGGTCGAACAACTGGTATTGTGCTTGACTC TGGTGATGGTGTGAGCCACACTGTCCCAATCTACGAGGGATACACCCTTCCTCATGCTA
Homology of Contig U35_290 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g36290.2 | 368 | 7e-125 | protein|actin, putative, expressed |
| Brachypodium v1_2 | Bradi2g24070.1 | 377 | 3e-125 | |
| Arabidopsis v10 | AT5G59370.1 | 377 | 9e-120 | | Symbols: ACT4 | actin 4 | chr5:23950109-23951586 FORWARD LENGTH=377 |