barSeed - Barley Seed Development Database

Probe CUST_489_PI415269222

Source Contig TA30386_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_489_PI415269222	Hv_44K_v2	GGAAATTGTAAGAGATATAAAGGAGAAGCTTGCCTATGTCGCCCTTGACTACGAGCAGGA	736	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.595	0.693	2.060	2.094	0.970	0.765
Raw	145.354	269.417	695.146	1118.172	184.805	158.765

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249063.1	1659	2e-24	804 - 863	100	60 / 60	plus	ABC01389 ABC01390 ABC01397
MLOC	MLOC_59829.2	1776	3e-21	1024 - 1083	97	58 / 60	plus	ABC01389 ABC01390 ABC01393 ABC01397
MLOC	MLOC_59829.1	1782	3e-21	1025 - 1084	97	58 / 60	plus	ABC01389 ABC01390 ABC01391 ABC01393 ABC01397
JLOC1	JLOC1_38957.1	1980	2e-21	952 - 1011	97	58 / 60	plus
Harvest21	ABC01395	1567	3e-25	720 - 779	100	60 / 60	plus
Harvest21	ABC01389	1558	6e-22	716 - 775	97	58 / 60	plus	ABC01389
Harvest35	U35_14174	1611	3e-25	737 - 796	100	60 / 60	plus

Contig Sequence (1205 bp)

>TA30386_4513 1205 Hv_44K_v2
AAAACCCAACGCCAACGCACGCAGCGCAGGACGACACCACTTTCCACGCCTCCGTCTCCG
CCAGCGACCTCCGCTTCCTCCTCCGGTCGCCGCCGCCTCGCTCCCCAAGACCAATGGCTG
ACGGCGAGGACATCCAGCCACTTGTGTGTGACAATGGGACTGGAATGGTCAAGGCTGGTT
TTGCTGGTGATGATGCCCCAAGAGCAGTTTTCCCTAGTATAGTTGGCCGCCCTCGGCACA
CAGGTGTCATGGTTGGAATGGGCCAAAAAGATGCCTATGTGGGTGATGAAGCGCAGTCAA
AAAGGGGTATCCTGACCTTGAAATACCCTATTGAGCATGGCATTGTGAGCAACTGGGATG
ACATGGAGAAAATCTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCCCCTGAAGAAC
ATCCAGTTTTGCTGACAGAAGCTCCTCTGAACCCAAAGGCAAACAGAGAGAAGATGACCC
AAATCATGTTCGAGACATTCAATGCACCCGCAATGTATGTGGCTATTCAAGCTGTGCTTT
CTCTATATGCCAGTGGTCGTACTACAGGTATTGTGCTTGATTCTGGTGACGGTGTGAGCC
ATACTGTGCCTATCTACGAGGGATATGCACTTCCTCATGCTATTCTCCGGCTGGATCTCG
CGGGTCGTGATCTGACCGACTCCCTAATGAAGATCCTCACGGAAAGGGGCTATTCCTTCA
CTACAACCGCAGAGCGGGAAATTGTAAGAGATATAAAGGAGAAGCTTGCCTATGTCGCCC
TTGACTACGAGCAGGAGCTGGAGACAGCCAAGAGCAGCTCGTCTGTTGAGAAGAGCTATG
AACTGCCTGACGGGCAGGTCATCACGATCGGTGCCGAGAGGTTCAGGTGCCCAGAGGTGC
TGTTCCAGCCCTCGCTGATCGGCATGGAGGCTCCTGGGATCCATGAGACCACCTACAACT
CCATCATGAAGTGCGACGTGGATATCAGGAAGGACCTCTACGGCAACATTGTGCTCAGTG
GAGGGACAACCATGTTCCCCGGCATCGCAGACAGGATGAGCAAGGAGATCACCGCCCTCG
CGCCGAGCAAGCATGAAGATCAAGGTCCGTGGCGCCTCCCGAGAGGAAATACAGGTGTCT
GGGATCGGGTGGCTCCATCCTTGCCTCTTTTAGCACATTCCAGCCAGATGTGGATATCCA
AGGGG

Homology of Contig TA30386_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g61970.1	378	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi1g02580.1	378
Arabidopsis v10	AT5G09810.1	377	\| Symbols: ACT7 \| actin 7 \| chr5:3052809-3054220 FORWARD LENGTH=377