- Probe CUST_11707_PI390587928
- Source Contig U35_29381
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11707_PI390587928 | Hv_44K_v2 | AAGAAGAAAGGAAGGAAGAAGAAGATGGCCGACGGCGAGGACATCCAGCCGCTGGTGTGC | 80 | GeneList: mediumpurple3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 13.127 | 14.787 | 1.917 | 0.514 | 0.833 | 0.666 |
| Raw | 172.043 | 256.408 | 31.149 | 10.303 | 7.192 | 6.850 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7384.1 | 1603 | 2e-24 | 104 - 163 | 100 | 60 / 60 | plus | ABC01389 ABC01390 ABC01391 ABC01393 ABC01397 |
| JLOC1 | JLOC1_4866.1 | 1767 | 8e-25 | 113 - 172 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC35348 | 631 | 3e-25 | 90 - 149 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28647 | 215 | 3e-25 | 81 - 140 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_39283 | 631 | 3e-25 | 90 - 149 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29381 | 215 | 3e-25 | 81 - 140 | 100 | 60 / 60 | plus |
Contig Sequence (215 bp)
>U35_29381 215 Hv_44K_v2 GTTAGATCCATCTTCGCAACAAGACAAACAACGTACAAGAGAGGAGGAGGAGGAGGAGGA GGAGTCGGGCCGTCCGGAGAAAGAAGAAAGGAAGGAAGAAGAAGATGGCCGACGGCGAGG ACATCCAGCCGCTGGTGTGCGACAACGGAACCGGTATGGTGAAGGCGGGGTTCGCCGGCG ACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTG
Homology of Contig U35_29381 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |