barSeed - Barley Seed Development Database

Probe ABC00816

Source Contig ABC00816

barSeed

Links

Affymetrix Source Sequence (1115 bp)

>ABC00816 1115
AATGGCGACCGCCGGGAAGGTGATCAAGTGCAAAGGGCGGTGGCCTGGGAGGCCGGGAAG
CCGCTGTCGATGGAGGAGGTGGAGGTGGCGCCGCCGCAGGCCATGGAGGTGCGCGACAAG
ATCCTCTACACCGCCCTCTGCCACACCGACGTCTACTTCTGGGAGGCGAACGCCAAACTC
CGGTCTTCCCTAGGATCTTGGGCCATGAAGCTGGAGGATTGTGGAGAGCGTTGGCGAGGG
CGTGACGGAGCTGGTGCCGGGAGACCATGTCCTCCCGGTGTTCACCGGAGAGTGCAAGGA
GTGTGCCCACTGCATGTCAGAGGAGAGCAACCTCTGTGACCTCCTCAGGATCAATGTCGA
CCGTGGCGTGATGATTGACGATGGGCAGTCCCGCTTCACCATCGACGGGAAACCCATCTT
CCACTTCCTCGGGACGTCCACCTTCAGCGAGTACACCGTGATCCATGTCGGGTGCGTCGC
CAAGATCGACCCCGAGGCGCCCCTCGACAAAGTCTGCCTCCTTAGCTGTGGTATCTCGAC
CGGCTCGGTGCGACGCTCAACGTCACGAAACCGAAGAAGGGTATGACGGTGGCGATTTTC
GGTCTTGGAGCTGTAGGCCTCGCTCCATGGAAGGGGCCAGGATGTCCGGCGCATCAAGGA
TTATCGGCGTGGACTTGAACCCTGCAAAACACGAACAAGTAAGAAATTTGGCTGCACCGA
CTTTGTGAACCCCAAAGACCACACCAAGCCAGTGCAAGAGTGATCGTGGAGATGACCGAT
GGAGGAGTCAACCGGGCGGTGGAGTGCACGGGCAACGCCGACGCCATGATATCCGCCTTC
GAATGCGTGCACGACGGTGGGGCGTGGCGCACAAGGAGGCGGTGTTCAAGACCCACCCCA
TGAACTTCCTCAACGAGAGGACGCTCAGGGGCACCTTCTTCGGCAACTACAAGCCGCGCA
CCGGCCTCCCCGGCGTCGTCGACATGTACATGAGGAAGGAGCTGGAGCTGGACAAGTTCA
TCACCCACAGCCTGCCCTTCTCGCAGATCAACACGGCCTTCGACCTCATGCTCAGGGGGG
AAGGCCTGCGCTGCGTCATCAGGAGTGAGGAGTAG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_17871.1	1503	1e-107	74 - 292	99	217 / 219	CUST_2718_PI390587928	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_59323.1	1693	0.0	291 - 1419	88	989 / 1129	CUST_3572_PI390587928 CUST_2721_PI390587928	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
AK355092	1636	0.0	261 - 1401	87	990 / 1141	None	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612 ABC38566
MLOC_17871.2	1037	0.0	176 - 818	99	637 / 643	None	ABC00393 ABC00816 ABC00903
MLOC_59323.2	1734	2e-86	1089 - 1452	84	304 / 364	CUST_2721_PI390587928 CUST_3572_PI390587928	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_53566.1	1139	0.0	316 - 1134	88	721 / 819	None	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_53566.2	1050	0.0	248 - 1013	89	681 / 766	None	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
AK251236.1	1549	0.0	103 - 1227	79	892 / 1131	CUST_27475_PI390587928 CUST_2725_PI390587928	ABC00268 ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612 ABC37216 ABC38668
MLOC_8050.1	974	3e-149	467 - 974	86	437 / 510	None	ABC00278 ABC00393 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_52816.1	681	4e-93	359 - 660	88	266 / 304	None	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_8049.1	606	1e-83	24 - 282	88	230 / 260	CUST_2717_PI390587928	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC38566