barSeed - Barley Seed Development Database

Probe ABC00654

Source Contig ABC00654

barSeed

Links

Affymetrix Source Sequence (1467 bp)

>ABC00654 1467
ACTGCTGAAGCAGATACAGCGACAGAGATCCGTCTTTCTATTCCAGCGACAGGGATGGCG
ACCGCTGGGAAGGTGATCAAGTGCAAAGCGGCGGTGGCGTGGGAGGCCGGGAAGCCGCTG
TCGATCGAGGAGGTGGAGGTGGCGCCGCCGCAGGCCATGGAGGTGCGCGTCAAGATCCTC
TACACTGCCCTCTGCCACACCGACGTCTACTTCTGGGAAGCCAAGGGGCAAACTCCGGTT
TTCCCTAGGATCTTAGGCCATGAAGCTGGAGGCATTGTCGAGAGCGTCGGAGAGGGCGTG
ACTGAGCTTGTGCCGGGTGACCATGTCCTCCCGGTTTTCACCGGCGAGTGCAAGGACTGT
GCCCACTGCAAGTCAGAGGAGAGCAACCTTTGTGATCTCCTTAGGATCAATGTGGATCGT
GGCGTGATGATCGGCGATGGGCAGTCTCGCTTCACCATCAACGGAAAACCGATCTTCCAC
TTCGTCGGGACCTCCACCTTCAGTGAGTACACCGTCATCCATGTCGGTTGCCTCGCAAAG
ATCAACCCCGAGGCTCCCCTCGACAAAGTTTGTGTCCTCAGCTGTGGTATCTCAACTGGA
CTTGGTGCTACGCTCAATGTCGCAAAACCAAAAAAGGGTTCCACGGTGGCCATTTTCGGT
CTTGGAGCTGTAGGACTGGCTGCCATGGAAGGGGCCAGGATGGCTGGGGCATCAAGGATC
ATTGGTGTGGATTTGAACCCTGCAAAATACGAACAAGCTAAGAAATTTGGATGCACAGAC
TTTGTGAACCCGAAGGACCACACTAAGCCCGTGCAAGAGGTGCTCGTCGAGATGACCAAT
GGCGGAGTCGACCGGGCAGTCGAGTGCACTGGCCACATCGACGCCATGATCGCCGCCTTC
GAATGCGTCCATGATGGGTGGGGCGTGGCTGTGCTGGTGGGTGTGCCGCACAAGGAGGCG
GTGTTCAAGACCCACCCAATGAACTTCCTCAACGAGAAGACCCTGAAAGGCACCTTCTTC
GGTAACTACAAGCCGCGCACTGACCTGCCGGAAGTGGTCGAGATGTACATGAGGAAGGAG
CTCGACCTGGAGAAGTTCATCACGCATAGCGTGCCCTTCTCGCAGATCAACACGGCGTTC
GACCTCATGCTCAAGGGGGAGGGCCTGCGCTGCATCATGAGGATGGACCAGTAGGAGCTG
GACCTGGAGAAGATCACCACAGTGTTTCTCGCTGTTTTCAGGTTTGGTGCTTGAGAAGCA
AAAAAAAAAAAAAAAAAAAAAGTTTGAAATCTCCCCTTGGATAATAATGTACTAGTCGCG
AGATGTGTTCATCTCTATGGTCTTAGAGGGAACGAATGGGTCTTTGTTTTGTGTTTGGTC
TCAGTGTGTCATCCACAGCTTTCAGTTAGCATGTAAATTACTATCATTGTGTACAAATAG
TAATCAATATCTTGCAGCTTCTGTCTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_59323.1	1693	0.0	237 - 1693	99	1448 / 1457	CUST_2721_PI390587928 CUST_3572_PI390587928	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
AK355092	1636	0.0	262 - 1401	92	1045 / 1140	None	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612 ABC38566
MLOC_59323.2	1734	0.0	1087 - 1734	99	643 / 648	CUST_2721_PI390587928 CUST_3572_PI390587928	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_53566.1	1139	0.0	317 - 1139	91	752 / 823	None	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_53566.2	1050	0.0	249 - 1015	92	705 / 767	None	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
AK251236.1	1549	0.0	102 - 1243	83	949 / 1147	CUST_27475_PI390587928 CUST_2725_PI390587928	ABC00268 ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612 ABC37216 ABC38668
MLOC_17871.1	1503	2e-92	75 - 292	95	207 / 218	CUST_2718_PI390587928	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_8050.1	974	0.0	466 - 973	89	457 / 511	None	ABC00278 ABC00393 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_8049.1	606	5e-113	4 - 282	93	260 / 279	CUST_2717_PI390587928	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC38566
MLOC_52816.1	681	1e-104	358 - 678	88	285 / 323	None	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612