barSeed - Barley Seed Development Database

Probe CUST_2721_PI390587928

Source Contig U35_14206

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2721_PI390587928	Hv_44K_v2	GGTCATCCACAGCTTTCAGTTAGCATGTAAATTACTATCATTGGGTACAAATAGTAATCA	1392	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.455	2.032	2.073	0.881	0.247	0.237
Raw	3289.959	4026.097	3613.140	2355.176	246.345	252.689

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59323.1	1693	3e-22	1624 - 1682	98	58 / 59	plus	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
MLOC	MLOC_59323.2	1734	3e-22	1657 - 1715	98	58 / 59	plus	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
JLOC1	JLOC1_38599.1	1653	1e-22	1579 - 1637	98	58 / 59	plus
Harvest21	ABC38071	603	5e-23	39 - 97	98	58 / 59	minus
Harvest21	ABC00654	1467	5e-23	1388 - 1446	98	58 / 59	plus	ABC00654
Harvest21	ABC30213	220	6e-22	157 - 213	98	56 / 57	plus
Harvest35	U35_14206	1473	3e-25	1393 - 1452	100	60 / 60	plus
Harvest35	U35_42413	603	5e-23	39 - 97	98	58 / 59	minus

Contig Sequence (1473 bp)

>U35_14206 1473 Hv_44K_v2
CAACGAACTGCAGAAGCAGAAACAGCGACAGAGATCCGTCTTTCTCTTCCAGCGACAGGG
ATGGCGACCGCTGGGAAGGTGATCAAGTGCAAAGCGGCGGTGGCGTGGGAGGCCGGGAAG
CCGCTGTCGATCGAGGAGGTGGAGGTGGCGCCGCCGCAGGCCATGGAGGTGCGCGTCAAG
ATCCTCTACACTGCCCTCTGCCACACCGACGTCTACTTCTGGGAAGCCAAGGGGCAAACT
CCGGTTTTCCCTAGGATCTTAGGCCATGAAGCTGGAGGCATTGTCGAGAGCGTCGGAGAG
GGCGTGACTGAGCTTGTGCCGGGTGACCATGTCCTCCCGGTGTTCACCGGCGAGTGCAAG
GACTGTGCCCACTGCAAGTCAGAGGAGAGCAACCTTTGTGATCTCCTTAGGATCAATGTG
GATCGTGGCGTGATGATCGGCGATGGGCAGTCTCGCTTCACCATCAACGGAAAACCGATC
TTCCACTTCGTCGGGACCTCCACCTTCAGTGAGTACACCGTCATCCATGTCGGTTGCCTC
GCAAAGATCAACCCCGAGGCTCCCCTCGACAAAGTTTGTGTCCTCAGCTGTGGTATCTCA
ACTGGACTTGGTGCTACGCTCAATGTCGCAAAACCAAAAAAGGGTTCCACGGTGGCCATT
TTCGGTCTTGGAGCTGTAGGACTGGCTGCCATGGAAGGGGCCAGGATGGCTGGGGCATCA
AGGATCATTGGTGTGGATTTGAACCCTGCAAAATACGAACAAGCTAAGAAATTTGGATGC
ACAGACTTTGTGAACCCGAAGGACCACACTAAGCCCGTGCAAGAGGTGCTCGTCGAGATG
ACCAATGGCGGAGTCGACCGGGCAGTCGAGTGCACTGGCCACATCGACGCCATGATCGCC
GCCTTCGAATGCGTCCATGATGGGTGGGGCGTGGCTGTGCTGGTGGGTGTGCCGCACAAG
GAGGCGGTGTTCAAGACCCACCCAATGAACTTCCTCAACGAGAAGACCCTGAAAGGCACC
TTCTTCGGTAACTACAAGCCGCGCACTGACCTGCCGGAAGTGGTCGAGATGTACATGAGG
AAGGAGCTCGACCTGGAGAAGTTCATCACGCATAGCGTGCCCTTCTCGCAGATCAACACG
GCGTTCGACCTCATGCTCAAGGGGGAGGGCCTGCGCTGCATCATGAGGATGGACCAGTAG
GAGCTGGACCTGGAGAAGATCACCACAGTGTTTCTCGCTGTTTTCAGGTTTGGTGCTTGA
GAAGCAAAAGACAAAAAAAAAAAAAAAGTTTGAAATCTCCCCTTGGATAATAATGTACTA
GTCGCGAGATGTGTTCATCTCTATGGGCTTAGAGGGAACGAATGGGTCTTTGTTTTGTGT
TTGGTCTCAGTGGGTCATCCACAGCTTTCAGTTAGCATGTAAATTACTATCATTGGGTAC
AAATAGTAATCAATATCTTGCAGCTTCTGTCTT

Homology of Contig U35_14206 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g10510.1	380	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi4g22620.1	380
Arabidopsis v10	AT1G77120.1	379	\| Symbols: ADH1, ADH, ATADH, ATADH1 \| alcohol dehydrogenase 1 \| chr1:28975509-28977216 FORWARD LENGTH=379