barSeed - Barley Seed Development Database

Probe ABC00393

Source Contig ABC00393

barSeed

Links

Affymetrix Source Sequence (1554 bp)

>ABC00393 1554
GGCTGCAAAGCAGAAGCAGCAACAAAGGTCAAAAGAGCGATCTTTCTCTTTGAGTTCCCG
CAGCGATCGAGTGTAAGTTAATGGCGACCGCCGGGAAGGTGATCAAGTGCAAAGCGGCGG
TGGCATGGGAGGCCGGGAAGCCGCTCTCGATCGAGGAGGTGGAGGTGGCGCCGCCGCAGG
CCATGGAGGTGCGAGTCAAGATCCTCTACACCGCCCTCTGCCACACTGACGTCTACTTCT
GGGAAGCCAAGGGGCAAACTCCGGTTTTCCCAAGGATCTTAGGCCATGAGGCTGGAGGTA
TTGTTGAGAGCGTCGGAGAGGGCGTGACCGAGCTCGTGCCAGGTGACCATGTCCTGCCGG
TGTTCACTGGCGAGTGCAAGGATTGTGCTCACTGCAAGTCAGAGGAGAGCAACCTCTGTG
ACCTCCTCAGGATCAATGTCGACCGGGGCGTGATGATCGGCGATGGGCAGTCCCGCTTCA
CCACCGGTGGGAAACCGATATTCCACTTCGTCGGAACCTCTACCTTCAGCGAGTACACCG
TGATCCATGTTGGGTGCCTAGCGAAGATTAACCCCGAGGCGCCCCTTGACAAAGTTTGTG
TTCTCAGCTGCGGTATCTCAACTGGTCTTGGTGCGACTCTCAATGTCGCAAAACCGAAAA
AGGGTTCGACGGTGGCAATTTTTGGTCTTGGAGCTGTAGGCCTTGCTGCCATGGAAGGGG
CCAAGATGGCTGGGGCATCAAGGATCATTGGTGTGGACTTGAACCCTGCAAAGTACGAAC
AAGCTAAGAAGTTTGGCTGCACAGACTTTGTAAACCCAAAGGACCACACCAAGCCAGTGC
AAGAGGTGCTTGTCGAGATGACAAACGGCGGAGTCGACAGAGCAGTGGAGTGTACGGGAC
ACATTGACGCCATGATATCCGCCTTCGAATGCGTTCACGATGGGTGGGGCGTGGCCGTGC
TGGTGGGCGTCCCGCACAAGGAGGCGGTGTTCAAGACACACCCGATGAACTTCCTCAACG
AGAGGACCCTGAAGGGCACCTTCTTCGGCAACTACAAGCCGCGCACTGACCTCCCGGAAG
TCGTCGAGATGTACATGAGGAAGGAGCTGGACCTGGAGAAGTTCATCACGCACAACGTGC
CATTCTCGCAGATCAACACGGCGTTCGACCTCATGCTCAAGGGAGAGGGACTTCGCTGCG
TCATGAGGATGGACGAGTAGATCGACTGATCGAGCTTCTTCGTCACATCCCTCGCTGCTT
TCAGATTTGGTGCTCGAGAAAAACGAACAAAAAAAGTTTGTAAGATCTTACCTCCGGTAA
TAATGTATAGTGAGCATGTGTTGAGCTCTTTTTTGTAAAAAAAAAAAAAAATGTATGTGT
TTTGTCACAAGGAACCAACATGTATGGTTTGATCTTTATTTTCAGTGTGTCGCGATCGCG
ACGCGACCGTTTGAGCAATCTGTTTGGGCGTACATGAACATTTTCCACAGTGTAATAATT
TGCAGTTTCCCACATCGGCATCTTCATTTTTAACTGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK355092	1636	0.0	183 - 1636	99	1448 / 1455	None	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612 ABC38566
MLOC_53566.1	1139	0.0	238 - 1139	100	902 / 902	None	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_59323.1	1693	0.0	291 - 1430	92	1044 / 1140	CUST_2721_PI390587928 CUST_3572_PI390587928	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_53566.2	1050	0.0	170 - 1050	99	872 / 881	None	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_59323.2	1734	9e-141	1087 - 1463	91	342 / 377	CUST_2721_PI390587928 CUST_3572_PI390587928	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_8049.1	606	0.0	4 - 602	99	593 / 599	CUST_2717_PI390587928	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC38566
MLOC_17871.1	1503	6e-88	74 - 296	93	208 / 223	CUST_2718_PI390587928	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
AK251236.1	1549	0.0	103 - 1236	82	929 / 1139	CUST_2725_PI390587928 CUST_27475_PI390587928	ABC00268 ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612 ABC37216 ABC38668
MLOC_17871.2	1037	0.0	178 - 818	87	555 / 641	None	ABC00393 ABC00816 ABC00903
MLOC_8050.1	974	2e-177	466 - 973	89	454 / 511	None	ABC00278 ABC00393 ABC00654 ABC00816 ABC00903 ABC25612
MLOC_52816.1	681	5e-94	359 - 678	86	276 / 320	None	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612