- Probe CUST_3572_PI390587928
- Source Contig U35_42413
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3572_PI390587928 | Hv_44K_v2 | CAGTGTGTCATCCACAGCTTTCAGTTAGCATGTAAATTACTATCATTGTGTACAAATAGT | 43 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.188 | 1.846 | 1.851 | 0.851 | 0.232 | 0.225 |
| Raw | 4317.538 | 5394.637 | 4776.633 | 3407.993 | 340.748 | 354.814 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_59323.1 | 1693 | 2e-24 | 1618 - 1677 | 100 | 60 / 60 | plus | ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612 |
| MLOC | MLOC_59323.2 | 1734 | 2e-24 | 1651 - 1710 | 100 | 60 / 60 | plus | ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612 |
| JLOC1 | JLOC1_38599.1 | 1653 | 8e-25 | 1573 - 1632 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC38071 | 603 | 3e-25 | 44 - 103 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00654 | 1467 | 3e-25 | 1382 - 1441 | 100 | 60 / 60 | plus | ABC00654 |
| Harvest35 | U35_42413 | 603 | 3e-25 | 44 - 103 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14206 | 1473 | 6e-22 | 1388 - 1447 | 97 | 58 / 60 | plus |
Contig Sequence (603 bp)
>U35_42413 603 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAGACAGAAGCTGCAAGATATTGATTACTATTTGTACACAATG ATAGTAATTTACATGCTAACTGAAAGCTGTGGATGACACACTGAGACCAAACACAAAACA AAGACCCATTCGTTCCCTCTAAGACCATAGAGATGAACACATCTCGCGACTAGTACATTA TTATCCAAGGGGAGATTTCCAAACTTTTTGTTTTTTTTTTTGTCTTTTGCTTCTCAAGCA CCAAACCTGAAAACAGCGAGAAACACTGTGGTGATCTTCTCCAGGTCCAGCTCCTACTGG TCCATCCTCATGATGCAGCGCAGGCCCTCCCCCTTGAGCATGAGGTCGAACGCCGTGTTG ATCTGCGAGAAGGGCACGCTATGCGTGATGAACTTCTCCAGGTCGAGCTCCTTCCTCATG TACATCTCGACCACTTCCGGCAGGTCAGTGCGCGGCTTGTAGTTACCGAAGAAGGTGCCT TTCAGGGTCTTCTCGTTGAGGAAGTTCATTGGGTGGGTCTTGAACACCGCCTCCTTGTGC GGCACACCCACCAGCACAGCCACGCCCCACCCATCATGGACGCATTCGAAGGCGGCGATC ATG
Homology of Contig U35_42413 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g10480.4 | 269 | 2e-59 | protein|dehydrogenase, putative, expressed |
| Brachypodium v1_2 | Bradi4g22620.1 | 380 | 3e-65 | |
| Arabidopsis v10 | AT1G77120.1 | 379 | 3e-52 | | Symbols: ADH1, ADH, ATADH, ATADH1 | alcohol dehydrogenase 1 | chr1:28975509-28977216 FORWARD LENGTH=379 |