Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u39384	65.3	+	+	6958	-3703	Containing

Transcripts from Gene HORVU5Hr1G099490

Transcript	Length(bp)	Description
HORVU5Hr1G099490.1	2472	gene=HORVU5Hr1G099490 CDS=1539-2429
HORVU5Hr1G099490.2	2661	gene=HORVU5Hr1G099490 CDS=390-2621
HORVU5Hr1G099490.3	2665	gene=HORVU5Hr1G099490 CDS=976-2625
HORVU5Hr1G099490.4	1993	gene=HORVU5Hr1G099490 CDS=968-1966
HORVU5Hr1G099490.5	2887	gene=HORVU5Hr1G099490 CDS=968-2593
HORVU5Hr1G099490.6	2883	gene=HORVU5Hr1G099490 CDS=382-2589
HORVU5Hr1G099490.7	2580	gene=HORVU5Hr1G099490 CDS=381-2396
HORVU5Hr1G099490.8	2862	gene=HORVU5Hr1G099490 CDS=1485-2672
HORVU5Hr1G099490.9	2202	gene=HORVU5Hr1G099490 CDS=378-1577
HORVU5Hr1G099490.10	2516	gene=HORVU5Hr1G099490 CDS=377-2515
HORVU5Hr1G099490.11	2680	gene=HORVU5Hr1G099490 CDS=1458-2345
HORVU5Hr1G099490.12	2644	gene=HORVU5Hr1G099490 CDS=358-2457
HORVU5Hr1G099490.13	3004	gene=HORVU5Hr1G099490 CDS=923-2428
HORVU5Hr1G099490.14	2756	gene=HORVU5Hr1G099490 CDS=334-2547
HORVU5Hr1G099490.15	2917	gene=HORVU5Hr1G099490 CDS=1442-2629
HORVU5Hr1G099490.16	2604	gene=HORVU5Hr1G099490 CDS=1390-2397
HORVU5Hr1G099490.17	2610	gene=HORVU5Hr1G099490 CDS=289-1488
HORVU5Hr1G099490.18	2670	gene=HORVU5Hr1G099490 CDS=250-2457
HORVU5Hr1G099490.19	3310	gene=HORVU5Hr1G099490 CDS=860-3067
HORVU5Hr1G099490.20	1862	gene=HORVU5Hr1G099490 CDS=868-1860
HORVU5Hr1G099490.21	2277	gene=HORVU5Hr1G099490 CDS=273-2276
HORVU5Hr1G099490.22	1627	gene=HORVU5Hr1G099490 CDS=2-1339

Exon Structure of HORVU5Hr1G099490

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os05g22370.2	+2	0.0	918	502/725 (69%)	protein|N-acetylglucosaminyl transferase component, putative, expressed
TAIR PP10	AT3G57170 @ ARAPORT AT3G57170.1 @ TAIR	+2	3e-117	374	233/531 (44%)	Symbols: | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560
BRACH PP3	Bradi1g06945.1.p	+2	0.0	1112	592/737 (80%)	pacid=32803293 transcript=Bradi1g06945.1 locus=Bradi1g06945 ID=Bradi1g06945.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons