- Transcript HORVU5Hr1G099490.4
- Transcript IDHORVU5Hr1G099490.4
- Gene IDHORVU5Hr1G099490
Barley RTD
Exon Structure of HORVU5Hr1G099490.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 610332575 | 610332322 | + |
| chr5H | 2 | 610333705 | 610333396 | + |
| chr5H | 3 | 610335480 | 610335042 | + |
| chr5H | 4 | 610335745 | 610335608 | + |
| chr5H | 5 | 610335929 | 610335826 | + |
| chr5H | 6 | 610336235 | 610336014 | + |
| chr5H | 7 | 610337091 | 610336566 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g22370.2 | +2 | 0.0 | 489 | 246/321 (77%) | protein|N-acetylglucosaminyl transferase component, putative, expressed |
| TAIR PP10 | AT3G57170 @ ARAPORT AT3G57170.1 @ TAIR |
+2 | 3e-76 | 254 | 137/329 (42%) | Symbols: | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560 |
| BRACH PP3 | Bradi1g06945.5.p | +2 | 0.0 | 559 | 268/322 (83%) | pacid=32803298 transcript=Bradi1g06945.5 locus=Bradi1g06945 ID=Bradi1g06945.5.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1993 bp)
>HORVU5Hr1G099490.4 1993 150831_barley_pseudomolecules CCCGCCGCCCGCCGCCGCCCGCTCCCGGCTCCCGCCTCTCGCTGTCCGGCTGCTTCCGCG CGAGCGCGAGCTCGACCACGCCGTTCCCCTACTGCGCGCAGCAGTAGTCCCTGCCGGCAT CCCCCCGTGGCCTCCACGCAGCCGCCGGGTCGCTACCGCTCTCGCTGACTCGTGCAGGCA CCGCGCAGGGGCTGCTGGCCGCTGCCTACTGCTCGGCTTTGGACAGGGGAAGCCCGGAGC CGTATCCCCACAGGGCCACAGAAGATCAATCTCTGTTGAGTAAATAGGAATTTGGGCCTG TGATTCTGTGGTGCGGGTGCAGTTCCAGAACCTTGTGGGTCCAGCTGAACTCCCTATGCC CCACATTTAGTCTGCCCCTGCATGGACCGGTGCAGGATCTGGTGGCCGCGCCAGCAACAT CAGTCTGAATTGGAGTCCGTCTCTGCCAGATATCTCCTTTTTGGATGGCTCTTCCCCCAT GCGGGGTCACTCGACATTGTTGTCGCGGCGTTCGTCTCCGAGGGAGAGATCTTGCGGTCT TTCCCCAACCTCGACACTTTCCAGACTGCTATCCTTTCCTCAAATAAAACGATGCCAACA GTGCTTCAAGAATCTGCAGCATTTACCATCCTTGGGGATTGTGTTGTACATCTTCCAAGA GATTTTGAAGGCTGCTGTGTTAAGCAAAAATATCACCTGTTGCGGGCTCAAGTTGTTCAG GCAGAGCATGCTGACACAAACCAAGACAGTTCTATTGCATTGGGTGGATCATTGGGAAGC GAAGATCAAGACCAAAGTGAGAATAATGGAAAATGGGAATGTGATTGTAGTGTATTAGAC GGTTTTCTGGATAAGTGCAAGAAGTCAGTAGTGAAACGTGGCGACTGGGTGCACTTCTGC TGTAAGCCTGAAAAGAGCTTGAAAAGCAATCTGAATCAAATTCCAGTGCTTCATCATTTG TATCTTGATGACCAGAAGGTTGAAATTAATCATTGCCACGTATGTCATACTTTATGATGT TCCTGTTGCTGGTAGAAACCATTTCTCCCTGGGCGAGGATGCACCTTATAGGATGAAGTC CCCCTTCAAAAGGCCAAATTGGATAAATAATCTGCAAAAGAAACGACCATTTCTTGATTT GGATCCGATTGTGTTGGCGCTTAATTGTTCAAATTCAGCTAGATTGTCAGTTGCTTGGAA AACTACTAATAACAGCTCTGCGGCTCATTTCTTGTTTGCAACTGTGATTGATGCCTTAGT TCAAGTGGCACAACATTTCACAGGAATAATTTTGGCTTCAGTATCAACTATTATCTACAT CTTCATTCAGCTGTTCCGAAAATGTTTGAGCCATGTCTCTGAGCACTTTATATTACAAAA GGTTTTCAGACACTCATGGAAAAACATGCATCTCCGTTGTTCCCAAATTCTTTATTGGCC GATTTTCCTCCAAGATACTTCCCTAAGCTCCTATGTGAATGTCGAATATGCACACAAAGC TGCAATCCAGAAGCATGCTTTATGGTCAAATATTATCATGGATCTTCTGATGGGTTTCAT CCTTGGAGCAGCACTATTGTTGAACATGGAGACTATTTGCTCTTGGATTTTTGCTCTTCT TCACTACATGACAGATGCTGTCTTGAGATCTGGTTGTGTGTGGCTGATGGGTGTTCCAGC AGGCTTTAAGCTGAATACTGAGTTAGCAGAGCTTCTAGGCATGATTTCTTTGAATGCAAT CCAAATTTATTCTACCCTTTGGTTCATGGTGGGAGGCTTCCTTAGGCATATAATTCAAGG CCTTGCATTTTCTGGAATTATTTTAGGTTTCACGGTTCCTGTTTCAATCTTCATTGACAT TATCCAGCTTGCGACATTGCATGTTACCATGCTTCAGTGGTTAATCTCCTTAATATATTC AAGGCAGATTCAGACAGTGACATCATTGTGGCGTCTTTTCAGGTAAACATGTTAGTATGT TGATGGATAAATG